genome.fa.s8523.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008523.1 Hibiscus syriacus cultivar Beakdansim tig00111392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4657139

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  11  of  18  ( 2060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2765239--2766587	675	2.0	674	99	0	2644	34	11	14	40	1.82
2768611--2768641	5	6.2	5	100	0	62	38	61	0	0	0.96
2771661--2771691	15	2.1	15	93	0	53	45	0	9	45	1.36
2771905--2771943	20	2.0	20	89	0	60	53	0	5	41	1.23
2777059--2777096	15	2.5	15	84	12	51	76	2	0	21	0.91
2778714--2778762	19	2.5	20	74	9	57	36	2	0	61	1.08
2778775--2778820	21	2.1	22	84	4	58	67	8	0	23	1.18
2781254--2781439	74	2.5	74	89	2	275	19	12	22	45	1.84
2781278--2781439	75	2.2	74	92	3	263	22	12	20	44	1.85
2786453--2786489	7	5.4	7	93	6	67	13	37	0	48	1.43
2786453--2786485	13	2.5	13	95	5	57	15	39	0	45	1.46
2791311--2791343	5	6.6	5	100	0	66	0	39	0	60	0.97
2792478--2792699	111	2.0	111	87	0	318	23	28	16	31	1.96
2798394--2798432	21	2.0	21	85	10	55	25	2	2	69	1.14
2799001--2799041	21	2.0	21	95	4	75	29	4	9	56	1.53
2799771--2799842	23	3.1	23	75	11	67	37	1	1	59	1.15
2799771--2799815	24	1.9	23	86	4	63	40	0	0	60	0.97
2805394--2805508	60	1.9	60	84	7	153	31	24	5	39	1.77
2807227--2807261	18	1.9	18	88	11	54	51	0	45	2	1.16
2815490--2815551	31	2.0	31	100	0	124	41	16	9	32	1.80
2820370--2820395	12	2.2	12	100	0	52	57	0	0	42	0.98
2830590--2831771	120	10.1	120	80	5	1164	28	28	14	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2831089--2831431	108	3.1	107	81	12	409	28	27	13	29	1.95
2830643--2831771	348	3.2	348	80	6	1085	28	28	14	28	1.96
2830969--2831726	228	3.2	228	78	8	700	28	27	14	29	1.95
2830590--2831716	468	2.4	473	80	6	1250	28	28	14	28	1.96
2831546--2831755	114	1.8	114	81	2	260	28	29	12	30	1.93
2838343--2838379	18	2.1	18	89	0	56	48	0	0	51	1.00
2838862--2838919	25	2.2	26	84	6	73	62	0	5	32	1.18
2838883--2838924	21	1.9	21	85	9	57	61	2	4	30	1.29
2839116--2839158	2	21.5	2	100	0	86	48	0	0	51	1.00
2841195--2841646	225	2.0	225	92	2	755	33	18	21	27	1.96
2847357--2847926	284	2.0	284	99	0	1131	40	10	10	38	1.74
2849768--2849882	59	1.9	59	82	5	142	33	24	5	37	1.78
2850006--2850188	60	3.1	60	83	3	226	41	5	22	30	1.76
2853790--2853817	14	2.0	14	100	0	56	21	42	28	7	1.79
2853804--2853858	20	2.8	20	85	0	83	27	34	25	12	1.92
2853785--2853924	10	13.0	10	67	14	64	25	30	32	10	1.90
2853835--2853928	33	2.8	33	90	0	134	26	26	37	9	1.87
2853973--2854045	33	2.2	33	90	0	110	12	35	26	26	1.91
2854015--2854062	20	2.2	20	85	10	60	10	31	31	27	1.90
2864812--2864845	16	2.1	16	94	0	59	32	26	8	32	1.87
2867534--2867586	20	2.7	20	93	0	88	9	22	22	45	1.81
2867560--2867671	41	2.7	41	90	0	170	21	17	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2867575--2867648	21	3.6	21	64	3	60	25	17	22	33	1.96
2869201--2869225	4	6.2	4	100	0	50	24	0	0	76	0.80
2874309--2874353	18	2.5	18	82	7	56	17	6	60	15	1.56
2874373--2874450	30	2.6	30	83	0	93	16	8	57	16	1.63
2898428--2898483	27	2.1	27	86	6	78	30	10	25	33	1.90
2898762--2898796	2	18.5	2	88	11	56	48	0	0	51	1.00
2900382--2900414	16	2.1	16	94	0	57	54	24	15	6	1.63
2904015--2904053	20	2.0	20	84	0	51	53	15	15	15	1.73
2904390--2904441	25	2.0	26	85	10	72	44	15	3	36	1.65
2915936--2915984	16	3.4	16	73	26	63	48	0	0	51	1.00
2915927--2915997	27	2.6	27	100	0	142	53	0	0	46	1.00
2915938--2916004	27	2.7	23	86	9	64	49	0	0	50	1.00
2916450--2916499	21	2.6	18	82	14	64	16	8	0	76	1.02
2930920--2931042	61	2.0	61	100	0	246	47	14	3	34	1.60
2934785--2934820	17	2.1	17	89	0	54	27	5	0	66	1.13
2934892--2935007	42	2.8	42	93	0	187	18	16	18	45	1.85
2935201--2935239	20	2.0	20	89	0	60	48	0	0	51	1.00
2935207--2935302	28	3.6	27	71	19	78	50	2	1	46	1.20
2935253--2935364	28	3.8	29	74	18	81	49	0	1	48	1.18
2935358--2935402	23	2.0	23	86	0	63	53	2	2	42	1.25
2935529--2935575	22	2.1	22	84	7	60	48	0	2	48	1.13
2935746--2935788	14	2.9	15	75	6	52	30	18	6	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2935808--2935879	35	2.1	35	100	0	144	36	11	19	33	1.87
2938285--2938332	25	1.9	25	86	0	69	37	18	14	29	1.91
2948836--2948881	20	2.1	22	84	11	60	52	0	4	43	1.21
2950598--2951005	199	2.1	199	97	0	782	32	12	21	33	1.90
2952514--2952731	72	3.0	72	91	0	355	18	55	8	16	1.67
2952514--2952728	24	9.0	24	87	2	288	19	54	8	17	1.68
2955635--2955755	60	2.0	60	90	0	188	24	27	5	42	1.77
2958070--2958186	35	3.3	35	89	2	164	51	13	3	31	1.58
2958124--2958184	21	3.2	21	63	29	55	55	13	0	31	1.38
2962300--2962346	23	2.0	24	83	4	60	31	10	17	40	1.83
2962682--2962707	2	13.0	2	100	0	52	50	0	0	50	1.00
2962790--2962816	8	3.4	8	100	0	54	25	25	14	33	1.95
2964431--2964472	22	1.9	22	85	9	59	50	0	2	47	1.14
2964462--2964495	18	2.0	16	88	11	50	44	0	0	55	0.99
2973290--2973315	13	2.0	13	100	0	52	38	0	7	53	1.30
2978558--2978749	96	2.0	96	93	1	332	45	12	11	30	1.77
2978560--2978787	96	2.4	93	83	9	278	48	12	11	28	1.75
2978935--2978968	17	2.0	17	94	0	59	50	2	0	47	1.16
2981269--2981368	51	2.0	51	91	0	164	22	23	10	45	1.82
2985173--2985231	31	1.9	31	96	0	109	42	8	6	42	1.61
2989269--2989408	73	1.9	73	92	0	235	26	14	18	40	1.89
2996423--2996468	2	22.5	2	95	4	83	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2997750--2997789	20	2.0	20	100	0	80	40	10	30	20	1.85
3002134--3002213	39	2.1	39	97	0	151	25	12	15	47	1.80
3002940--3002967	2	14.0	2	100	0	56	50	0	0	50	1.00
3014877--3014906	3	10.0	3	100	0	60	66	0	0	33	0.92
3016793--3016854	29	2.1	30	81	3	72	41	3	20	33	1.69
3025503--3025529	2	13.5	2	100	0	54	48	0	0	51	1.00
3051840--3051868	15	2.0	15	93	6	51	48	10	13	27	1.75
3054819--3054935	59	2.0	59	83	3	146	27	20	16	35	1.94
3063208--3063258	21	2.3	23	83	9	63	56	9	11	21	1.63
3063216--3063258	23	2.0	21	86	9	59	60	9	11	18	1.57
3071130--3071159	12	2.4	13	94	5	53	60	6	13	20	1.55
3075991--3076031	4	10.2	4	94	0	64	4	24	19	51	1.66
3076029--3076341	4	78.2	4	100	0	626	24	0	24	50	1.50
3078709--3078856	47	3.2	47	62	25	114	19	16	21	41	1.90
3078675--3078909	93	2.5	93	90	2	355	20	15	21	42	1.89
3082842--3082881	19	2.2	18	86	4	53	72	0	0	27	0.85
3086544--3086603	31	1.9	31	83	6	77	30	3	5	61	1.33
3095402--3095439	18	2.1	18	90	5	58	47	0	0	52	1.00
3095361--3095433	32	2.2	33	79	11	80	46	0	1	52	1.09
3095459--3095568	54	2.0	54	83	0	139	52	1	5	40	1.35
3101154--3101203	8	6.2	8	100	0	100	38	26	12	24	1.90
3109978--3110038	26	2.3	26	85	2	86	3	16	27	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3110588--3110623	5	7.0	5	96	3	63	22	38	19	19	1.93
3118219--3118318	31	3.2	30	73	10	85	51	4	3	42	1.36
3120170--3120205	17	2.1	17	89	0	54	41	16	2	38	1.63
3120317--3120409	31	3.0	31	77	3	107	45	1	5	48	1.32
3120485--3120526	22	1.9	22	85	9	59	64	0	2	33	1.07
3121023--3121067	22	2.0	23	91	4	74	51	17	24	6	1.70
3121085--3121128	15	2.8	17	86	13	67	77	4	6	11	1.11
3121708--3121846	20	6.8	20	72	14	97	41	20	20	17	1.90
3121770--3121859	20	4.4	20	81	8	110	37	25	20	16	1.93
3121970--3122038	6	11.5	6	100	0	138	33	50	15	0	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18