Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008523.1 Hibiscus syriacus cultivar Beakdansim tig00111392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4657139

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2060 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4616301--4616337
14
2.6
14
91
0
65
45
24
0
29
1.53
4617690--4617756
21
3.2
21
68
4
55
19
19
35
25
1.95
4617690--4617812
42
2.9
41
79
7
113
22
17
36
22
1.95
4619868--4619956
19
4.7
19
91
0
142
47
21
20
11
1.81
4619952--4619996
19
2.4
19
88
0
72
6
15
24
53
1.66
4620544--4620596
20
2.7
20
93
0
88
26
20
28
24
1.99
4620605--4620658
20
2.7
20
97
0
99
25
18
24
31
1.97
4620545--4620661
61
1.9
61
85
0
162
23
17
24
33
1.97
4620540--4620679
61
2.3
61
80
6
160
23
18
24
33
1.97
4620729--4620769
21
2.0
21
85
0
55
34
31
17
17
1.93
4628885--4628918
2
18.0
2
88
11
54
50
0
0
50
1.00
4636765--4636848
31
2.5
34
75
15
93
50
0
10
39
1.37
4636789--4636855
31
2.1
32
91
2
109
49
0
13
37
1.42
4640527--4640572
19
2.3
21
77
11
60
50
0
0
50
1.00
4645741--4645773
17
1.9
17
93
0
57
39
9
6
45
1.61
4648274--4649007
244
3.0
243
98
1
1418
25
23
20
30
1.99
4652399--4652445
25
2.0
25
84
16
64
48
6
4
40
1.48
4653140--4653190
25
2.0
25
84
0
66
31
37
1
29
1.69
4654461--4654806
173
2.0
174
87
3
502
38
13
12
35
1.83
4655113--4655172
27
2.2
26
82
8
66
55
3
3
38
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!