genome.fa.s8523.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008523.1 Hibiscus syriacus cultivar Beakdansim tig00111392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4657139

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476561--476629	34	2.0	34	94	0	120	31	14	11	42	1.82
477178--477945	105	7.3	105	91	2	1134	22	17	26	33	1.96
478619--478859	36	6.9	35	76	15	185	41	14	18	25	1.88
479339--479374	18	2.0	18	88	0	54	41	30	8	19	1.81
479788--479836	22	2.2	22	92	0	80	28	14	24	32	1.94
479800--479843	22	2.0	22	86	0	61	31	13	22	31	1.93
480471--480520	24	2.2	24	85	7	68	0	14	6	80	0.90
481655--481695	20	2.0	20	85	9	55	51	4	17	26	1.65
485925--485964	21	1.9	21	89	0	62	10	25	40	25	1.86
485920--486007	20	4.2	20	70	17	63	14	27	35	22	1.93
489810--489849	21	1.9	21	85	10	55	35	10	2	52	1.48
493146--493201	18	3.1	17	76	19	51	71	1	10	16	1.22
493178--493211	9	3.8	9	88	11	52	76	0	2	20	0.92
493151--493211	22	2.7	22	78	14	54	73	1	8	16	1.14
493177--493211	13	2.6	13	90	4	52	77	0	2	20	0.90
493687--493729	18	2.5	17	81	7	52	69	2	2	25	1.12
493689--493727	14	2.8	13	88	11	51	71	2	2	23	1.10
494142--494210	34	2.0	34	94	0	120	31	14	11	42	1.82
494928--494979	19	2.7	19	87	3	68	19	25	28	26	1.98
494928--494977	10	5.1	10	74	13	50	20	22	30	28	1.98
494975--495002	14	2.0	14	100	0	56	21	50	21	7	1.72
494973--495031	17	3.4	17	79	9	73	18	44	23	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494976--495025	22	2.5	19	90	9	73	20	50	22	8	1.74
495921--496044	63	2.0	63	82	9	155	16	25	29	28	1.97
495921--496042	31	3.9	31	72	14	81	17	26	28	27	1.97
497774--497849	22	3.5	22	68	13	75	34	18	0	47	1.49
511583--511638	14	4.2	13	74	17	51	41	30	3	25	1.72
524344--524368	2	12.5	2	100	0	50	52	0	0	48	1.00
524282--524765	258	1.8	263	84	8	666	40	19	11	28	1.87
525014--525041	10	2.8	10	100	0	56	21	46	0	32	1.52
525392--525569	60	3.0	60	84	1	196	33	21	3	41	1.72
525692--525868	60	3.0	60	78	7	184	42	5	18	33	1.72
527760--527789	2	15.0	2	100	0	60	50	0	0	50	1.00
533407--533455	18	2.8	17	75	6	53	48	0	4	46	1.20
556898--557007	25	4.2	27	72	24	83	52	0	5	41	1.24
567054--567126	31	2.4	31	81	4	76	60	0	5	34	1.20
567117--567150	17	2.1	17	88	5	52	52	0	0	47	1.00
567156--567230	24	2.9	26	76	21	70	50	0	6	42	1.28
567457--567517	31	2.0	31	100	0	122	54	9	9	26	1.64
567672--567721	2	25.0	2	100	0	100	50	0	0	50	1.00
569722--569769	2	24.0	2	100	0	96	50	0	0	50	1.00
574057--574199	59	2.4	59	83	4	171	37	9	15	37	1.80
579866--579963	31	3.2	30	76	11	92	41	3	8	46	1.49
582876--583103	78	3.0	77	84	10	306	21	14	27	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613659--613733	3	25.3	3	97	2	143	66	0	0	33	0.92
615845--615892	27	1.9	24	84	16	62	33	10	6	50	1.62
616587--616620	2	17.0	2	100	0	68	50	0	0	50	1.00
625312--625336	2	12.5	2	100	0	50	52	0	0	48	1.00
627185--627256	32	2.3	32	85	2	101	52	18	16	12	1.74
632313--632378	33	2.0	33	96	0	123	15	13	27	43	1.84
638137--638236	51	2.0	51	91	0	164	24	19	10	47	1.79
641276--641369	47	2.0	47	97	0	179	39	15	21	23	1.92
646371--646408	19	2.0	19	100	0	76	31	36	21	10	1.87
646423--646493	32	2.2	32	92	0	115	30	30	29	8	1.87
646746--646802	13	4.1	13	83	16	78	29	47	22	0	1.52
646749--646806	30	1.9	30	100	0	116	29	48	22	0	1.51
646820--646934	29	4.0	29	95	2	196	18	26	38	16	1.92
656627--656695	26	2.6	25	78	19	68	39	4	1	55	1.29
656680--656704	8	3.1	8	100	0	50	40	0	0	60	0.97
658324--658348	13	1.9	13	100	0	50	68	0	32	0	0.90
660362--660401	17	2.4	17	100	0	80	40	12	12	35	1.81
663658--663700	20	2.1	21	95	4	79	16	13	48	20	1.80
663679--663719	16	2.6	16	92	0	64	17	12	51	19	1.76
668097--668432	49	6.9	49	93	1	550	42	0	11	45	1.45
668097--668432	97	3.4	98	94	1	577	42	0	11	45	1.45
668331--668407	22	3.3	22	66	22	57	44	2	9	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668521--668563	12	3.7	11	90	9	68	55	0	0	44	0.99
668513--668561	23	2.1	23	88	7	73	57	0	2	40	1.10
668588--668783	26	7.8	26	79	12	131	45	2	8	43	1.48
668593--668783	49	3.8	49	81	4	188	46	2	8	42	1.48
668653--668720	3	23.3	3	75	11	61	55	1	4	38	1.29
668665--668783	11	9.6	11	71	21	67	48	0	7	42	1.37
668664--668717	23	2.5	20	85	8	63	55	0	5	38	1.23
668896--668940	24	1.9	24	86	4	65	40	2	4	53	1.33
668907--668948	17	2.5	17	80	0	57	40	0	2	57	1.12
671244--671346	30	3.4	30	82	14	115	46	11	1	39	1.51
671523--671562	21	1.9	21	100	0	80	57	15	0	27	1.38
671671--671729	18	3.3	18	71	17	59	47	6	0	45	1.29
671664--671735	36	1.9	38	91	5	121	48	8	0	43	1.33
671754--671818	28	2.3	29	78	19	75	44	16	1	36	1.58
671897--671934	9	4.2	9	83	10	51	65	2	0	31	1.06
672321--672364	8	5.0	9	81	13	56	20	43	22	13	1.87
679455--679481	2	13.5	2	100	0	54	48	0	0	51	1.00
689839--689888	23	2.2	23	92	0	82	54	4	4	38	1.38
691823--691860	17	2.2	17	86	9	51	73	5	0	21	1.02
693899--693927	12	2.3	13	94	5	51	68	0	0	31	0.89
696313--698388	105	19.7	106	93	1	3325	23	17	25	34	1.96
696313--698388	632	3.3	630	94	1	3503	23	17	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702115--702143	12	2.3	13	94	5	51	68	0	0	31	0.89
703817--703918	39	2.6	38	79	10	109	46	4	4	44	1.46
708982--709019	15	2.5	15	95	0	67	15	39	15	28	1.89
712304--712440	65	2.2	61	90	5	211	35	21	9	33	1.86
726409--726478	31	2.3	31	85	7	90	32	27	21	18	1.97
731174--731211	16	2.4	16	91	4	60	31	21	10	36	1.87
743414--743444	2	15.5	2	100	0	62	51	0	0	48	1.00
743763--743790	2	14.0	2	100	0	56	50	0	0	50	1.00
746321--746348	14	2.0	14	100	0	56	42	0	7	50	1.30
746370--746412	13	3.2	13	80	6	50	37	0	2	60	1.10
760980--761010	15	2.1	15	93	0	53	51	0	0	48	1.00
762812--762836	2	12.5	2	100	0	50	48	0	0	52	1.00
769115--769148	11	3.0	11	86	4	50	17	2	17	61	1.46
772790--772830	21	2.0	21	100	0	82	9	21	9	58	1.59
779871--779927	20	2.8	20	81	0	78	43	26	14	15	1.85
779939--780001	20	3.2	20	93	0	108	47	14	17	20	1.82
780366--780464	21	4.8	21	83	6	114	23	19	11	46	1.81
782474--782515	14	2.9	15	78	7	59	42	7	19	30	1.78
782498--782567	20	3.5	20	96	0	131	40	10	14	35	1.79
782712--782759	11	4.5	11	78	19	57	54	0	6	39	1.26
782712--782748	19	2.0	18	89	5	56	56	0	5	37	1.22
782875--782939	28	2.3	27	82	15	78	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782875--782972	31	3.2	32	76	15	84	51	2	1	45	1.19
782996--783052	21	2.6	22	81	10	64	52	0	0	47	1.00
782991--783048	22	2.6	22	78	8	64	55	0	0	44	0.99
782932--783052	54	2.3	51	77	19	133	50	0	0	47	1.12
783226--783345	42	2.9	42	97	0	222	45	19	20	15	1.86
784883--784914	2	16.0	2	100	0	64	0	0	50	50	1.00
790696--790861	60	2.8	60	76	1	147	30	22	3	43	1.70
796652--796781	60	2.1	61	83	4	156	34	22	4	38	1.75
796910--797092	60	3.1	58	75	7	161	40	7	20	31	1.81
797610--797642	16	2.0	17	88	5	50	36	6	0	57	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18