Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008539.1 Hibiscus syriacus cultivar Beakdansim tig00111427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6067759

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  31  of  31  ( 3630 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6028623--6028688
20
3.3
20
82
0
78
45
19
18
16
1.86
6028925--6028968
22
2.0
22
90
0
70
20
15
43
20
1.88
6029156--6029289
20
6.7
20
83
5
153
24
18
26
30
1.98
6029279--6029371
20
4.5
21
78
4
100
17
24
18
39
1.91
6029279--6029371
41
2.3
41
100
0
150
17
24
18
39
1.91
6036135--6036169
6
5.8
6
96
0
61
51
0
37
11
1.38
6036478--6036512
18
2.0
17
88
5
52
65
0
2
31
1.07
6039779--6039854
23
3.2
23
77
7
64
52
9
1
36
1.42
6039899--6040000
22
4.8
22
68
18
74
38
2
0
57
1.20
6039978--6040017
18
2.2
17
86
8
53
25
5
0
70
1.08
6040181--6040585
82
4.9
83
82
2
440
31
18
17
32
1.94
6040277--6040585
165
1.9
165
85
2
433
32
18
15
33
1.92
6041196--6041228
15
2.2
15
100
0
66
24
6
27
42
1.78
6042846--6043206
194
1.9
195
80
1
427
37
11
11
39
1.78
6043938--6044003
2
33.0
2
100
0
132
50
0
0
50
1.00
6049077--6049116
20
1.9
21
85
10
55
37
37
10
15
1.80
6049331--6049400
34
2.1
32
89
5
104
31
15
25
27
1.96
6051243--6051301
21
3.1
18
79
15
73
33
8
6
50
1.59
6051413--6051471
30
2.0
28
90
9
91
37
3
15
44
1.63
6051413--6051471
29
2.0
30
93
6
102
37
3
15
44
1.63
6051708--6051748
21
2.0
21
85
9
57
31
21
24
21
1.98
6052469--6052529
2
30.5
2
100
0
122
49
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6055961--6056108
60
2.5
59
77
8
149
32
19
6
41
1.76
6056281--6056384
30
3.5
29
71
16
86
34
1
26
36
1.68
6056219--6056375
60
2.6
58
84
6
190
34
3
26
36
1.72
6056219--6056394
60
2.9
57
82
7
183
35
2
25
35
1.71
6057099--6057170
2
36.0
2
100
0
144
50
0
0
50
1.00
6063533--6063571
13
3.0
13
88
0
60
25
23
17
33
1.96
6063543--6063710
85
2.0
85
90
2
266
29
21
17
31
1.96
6063728--6063754
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31

The End!