genome.fa.s8610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  1  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729--1799	24	3.0	25	85	4	76	21	9	15	53	1.70
5426--5450	13	1.9	13	100	0	50	40	28	8	24	1.83
9024--9123	21	4.8	21	79	4	103	37	28	16	19	1.92
9032--9123	42	2.2	42	82	3	114	39	27	15	18	1.90
10038--10107	35	2.0	35	83	10	90	28	28	14	28	1.95
17256--17298	15	2.9	15	75	0	50	48	6	0	44	1.29
24998--25749	373	2.0	373	97	0	1423	32	13	17	35	1.90
32300--32352	17	3.3	15	80	15	52	56	24	0	18	1.42
34322--34361	21	1.9	21	89	0	62	10	25	40	25	1.86
34344--34404	20	2.9	21	85	7	70	18	26	31	24	1.97
38193--38232	21	1.9	21	90	10	64	37	10	0	52	1.35
60943--60984	21	2.0	21	90	0	66	33	9	9	47	1.68
74854--74888	15	2.3	15	85	0	52	8	14	25	51	1.70
82724--82965	40	6.2	39	76	11	203	44	4	6	44	1.50
82938--83010	31	2.4	30	91	6	121	39	2	6	50	1.43
83102--83155	3	17.7	3	81	11	65	27	3	0	68	1.06
83098--83155	22	2.7	22	89	2	82	27	3	0	68	1.05
90024--90750	84	8.7	83	79	4	687	30	25	19	23	1.98
90026--90618	247	2.4	249	89	1	931	30	25	20	24	1.99
91382--91623	39	6.3	37	79	12	222	43	4	7	44	1.52
91595--91690	31	3.2	30	84	10	117	38	2	7	52	1.41
91755--91807	3	17.3	3	77	11	54	26	3	1	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91761--91802	16	2.7	15	88	7	57	26	4	2	66	1.23
91746--91807	22	2.8	22	78	4	72	25	3	1	69	1.13
92754--92797	18	2.4	18	100	0	88	27	15	40	15	1.88
97417--97609	78	2.5	78	82	5	228	40	6	14	38	1.71
97626--97674	22	2.2	23	88	3	73	61	2	2	34	1.19
98935--98978	20	2.2	20	91	0	70	38	0	18	43	1.50
104014--104097	20	4.3	20	75	8	75	46	3	14	35	1.62
105497--105537	21	1.9	22	90	5	66	46	12	24	17	1.82
105870--105920	24	2.1	24	92	0	84	21	19	15	43	1.88
112060--112091	15	2.1	15	94	0	55	12	9	0	78	0.97
112061--112114	21	2.6	20	80	13	56	14	5	5	74	1.19
113183--113209	10	2.7	10	100	0	54	92	7	0	0	0.38
113594--113665	37	1.9	37	88	0	108	26	20	13	38	1.90
113681--113767	37	2.4	37	84	1	104	26	21	12	39	1.89
113783--114008	36	6.4	36	75	10	189	28	19	12	40	1.87
113600--113970	102	3.6	102	88	2	496	29	19	12	38	1.89
113600--113970	203	1.8	204	84	2	505	29	19	12	38	1.89
113804--114054	138	1.8	138	86	3	371	28	19	11	40	1.87
113957--114111	65	2.3	67	84	5	190	32	20	8	38	1.83
114847--115093	110	2.3	108	81	7	306	34	24	17	23	1.96
116463--116549	38	2.4	36	75	11	95	28	4	0	66	1.11
116488--116557	21	3.1	21	80	14	61	27	5	0	67	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116538--116628	2	46.5	2	87	12	136	46	2	0	51	1.13
116703--116790	44	2.1	43	82	18	105	23	3	1	71	1.08
116906--116939	18	1.9	17	88	5	50	14	11	0	73	1.10
116893--116939	17	2.7	17	78	12	51	17	10	0	72	1.12
128107--128147	16	2.3	18	88	12	59	78	4	17	0	0.93
129134--129333	110	1.8	110	84	4	278	37	23	17	22	1.94
130824--130853	2	15.0	2	100	0	60	50	0	0	50	1.00
130870--130943	16	4.7	15	75	14	60	35	2	1	60	1.19
130946--130977	15	2.1	15	94	0	55	12	9	0	78	0.97
130947--131000	21	2.6	20	80	13	56	14	5	5	74	1.19
130871--131035	14	10.5	14	67	23	55	26	4	2	66	1.25
132974--133028	28	2.0	28	92	0	92	30	3	10	54	1.52
133105--133147	18	2.4	18	100	0	86	39	0	0	60	0.97
137237--137307	33	2.2	33	81	0	79	16	15	22	45	1.85
137256--137333	16	4.8	16	64	9	50	8	12	29	48	1.72
137249--137317	33	2.1	33	86	0	93	15	11	26	46	1.80
137767--137811	20	2.2	21	84	4	56	28	8	35	26	1.87
139805--139890	37	2.6	31	73	21	84	47	4	0	47	1.22
144946--144990	23	2.0	23	86	0	63	42	11	13	33	1.79
144905--145067	87	1.9	87	94	0	290	39	12	14	33	1.83
145093--145588	200	2.5	200	85	3	624	29	14	14	41	1.85
149542--150471	200	4.7	200	85	2	1235	32	16	13	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149542--150506	400	2.4	398	87	3	1391	32	16	14	37	1.88
151860--151917	6	9.7	6	84	0	62	22	32	5	39	1.76
151860--151917	12	4.8	12	89	0	80	22	32	5	39	1.76
152836--152948	21	5.5	20	64	20	63	17	20	23	38	1.93
152857--152926	20	3.5	20	71	11	70	14	21	22	41	1.89
152833--152947	41	2.8	41	94	0	203	16	20	24	38	1.93
153524--153579	6	9.5	6	94	1	96	1	16	50	32	1.55
153688--153985	21	14.4	21	66	18	103	36	25	19	18	1.94
153685--153964	41	6.8	41	76	9	232	37	25	19	18	1.94
153747--154013	62	4.3	62	85	4	351	35	25	19	19	1.95
153874--153943	20	3.5	20	70	18	72	40	24	22	12	1.89
153682--153988	103	3.0	103	77	12	335	36	25	19	18	1.94
153788--154017	21	11.1	21	70	13	86	35	26	18	19	1.95
154001--154034	12	2.8	12	100	0	68	41	26	26	5	1.78
154167--154192	2	13.0	2	100	0	52	50	0	0	50	1.00
154853--155811	200	4.8	199	90	2	1465	32	15	14	37	1.88
156055--156122	19	3.6	19	93	0	118	52	11	2	32	1.53
161399--161473	37	2.0	37	85	10	100	49	2	0	48	1.15
166672--166731	27	2.2	27	87	0	84	43	3	0	53	1.17
166674--166816	31	4.8	30	76	13	102	39	5	2	52	1.37
166705--166811	31	3.4	32	79	12	107	37	5	2	54	1.39
166798--166873	30	2.5	29	82	4	80	35	3	2	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166878--166937	23	2.9	21	76	18	63	55	1	0	43	1.10
166912--166967	30	2.0	30	86	10	82	57	0	1	41	1.09
166892--166947	22	2.6	23	80	8	64	53	0	1	44	1.11
166891--166974	27	3.2	25	75	15	73	57	0	1	41	1.06
169529--169570	21	2.0	21	86	9	59	21	19	2	57	1.52
170255--170377	21	5.8	21	71	9	106	35	24	17	22	1.95
170266--170377	43	2.6	42	85	2	161	35	24	16	23	1.95
170959--170996	20	1.9	20	88	0	58	31	31	15	21	1.94
170958--171166	65	3.2	64	79	9	219	34	23	17	24	1.96
176941--176993	21	2.5	22	84	3	63	30	20	22	26	1.98
176941--177020	23	3.6	23	76	8	76	27	23	22	26	2.00
179345--179378	12	2.8	12	90	0	59	47	8	2	41	1.50
179678--179715	20	1.9	20	94	0	67	31	34	15	18	1.92
179762--179868	45	2.4	45	86	10	139	32	20	16	29	1.95
179838--179886	19	2.6	19	84	9	66	24	24	18	32	1.97
181788--181839	21	2.5	21	81	3	61	38	19	25	17	1.93
181828--181962	20	6.7	20	84	5	137	31	25	18	25	1.98
181825--181941	61	1.9	61	87	0	171	34	24	17	23	1.96
182453--182512	20	3.0	20	82	0	66	20	18	20	41	1.90
183801--183845	18	2.5	18	96	0	81	28	42	13	15	1.85
184211--184253	16	2.6	17	89	7	63	4	0	23	72	1.04
184318--184362	20	2.3	20	84	3	65	37	20	24	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184346--184423	33	2.4	33	95	0	138	47	20	17	14	1.82
184346--184404	19	3.4	19	68	22	65	49	18	16	15	1.80
184435--184491	14	3.8	14	74	17	60	12	15	22	49	1.78
184436--184507	32	2.2	33	92	7	121	15	16	20	47	1.83
184480--184546	19	3.5	19	78	11	73	17	20	23	37	1.94
184907--184994	41	2.1	41	85	2	122	21	43	14	20	1.88
186610--186676	19	3.6	19	82	9	93	17	20	23	37	1.94
186603--186667	19	3.3	20	87	6	80	16	21	20	41	1.90
187004--187051	20	2.4	20	92	0	78	27	20	29	22	1.99
187020--187093	20	3.7	20	80	3	76	21	17	25	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11