genome.fa.s8610.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187020--187114	41	2.3	41	81	3	111	20	20	24	35	1.95
192712--192802	21	4.3	21	78	8	103	37	23	16	23	1.94
192717--192799	43	2.0	42	90	2	130	37	20	16	25	1.93
197968--198042	31	2.4	31	84	0	87	34	13	10	41	1.79
200189--200225	2	18.5	2	100	0	74	51	0	0	48	1.00
202239--202288	21	2.4	21	82	0	64	30	32	22	16	1.95
202304--202447	21	6.8	21	78	13	152	19	20	25	34	1.96
202290--202444	42	3.6	42	93	3	265	19	19	23	37	1.94
203310--203373	21	3.1	21	80	8	87	39	18	18	23	1.93
203310--203394	40	2.1	41	88	4	127	35	22	20	22	1.96
203365--203419	21	2.6	21	91	0	92	29	30	21	18	1.97
209727--209854	65	2.0	65	85	3	177	32	19	19	28	1.96
210531--210562	2	16.0	2	93	0	55	46	0	3	50	1.17
218402--218559	65	2.4	65	76	7	158	32	18	20	28	1.96
219573--219608	15	2.3	16	90	4	56	66	8	8	16	1.42
219829--219917	31	2.8	31	81	6	99	53	4	15	25	1.61
219826--219917	32	2.9	31	79	7	105	55	4	15	25	1.58
224415--224447	16	2.1	16	100	0	66	30	12	12	45	1.78
229597--229675	6	12.8	6	73	24	51	77	3	5	13	1.08
229597--229675	19	4.3	18	71	16	63	77	3	5	13	1.08
230394--230463	34	2.1	33	86	2	95	54	4	14	27	1.58
230448--230486	19	2.1	19	95	0	69	51	5	17	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230466--230539	32	2.3	32	81	4	96	50	4	14	31	1.62
236200--236224	3	8.3	3	100	0	50	68	32	0	0	0.90
237329--237394	19	3.4	19	89	4	105	15	24	7	53	1.68
239836--239887	26	2.0	26	100	0	104	42	15	15	26	1.87
242259--242318	21	2.9	21	89	0	84	38	31	8	21	1.83
245393--245430	2	19.0	2	100	0	76	50	0	0	50	1.00
258784--258826	3	14.3	3	80	0	50	39	2	0	58	1.11
266150--266216	34	2.0	34	90	0	107	34	17	10	37	1.85
266568--266799	70	3.4	68	84	5	272	30	19	12	37	1.89
266638--266832	33	5.7	35	70	8	125	30	19	12	36	1.89
266676--266864	33	5.6	33	75	9	143	31	19	12	35	1.89
266614--266832	70	3.2	67	85	3	201	32	19	12	35	1.89
267251--267346	43	2.2	43	86	0	129	29	30	15	25	1.96
268452--268482	16	1.9	16	100	0	62	12	19	19	48	1.81
273408--273441	16	2.1	16	88	0	50	0	17	8	73	1.08
281315--281507	87	2.2	87	89	0	305	36	24	13	25	1.93
282359--282420	5	13.0	5	72	14	51	37	3	1	58	1.24
285602--285646	23	2.0	23	82	8	56	24	0	8	66	1.20
299055--299113	14	4.3	13	80	8	64	25	0	13	61	1.33
301078--301229	77	2.0	77	100	0	304	36	19	15	27	1.93
302658--302709	15	3.5	15	76	5	61	28	28	17	25	1.97
302656--302739	29	2.9	29	85	1	107	26	34	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302703--302741	14	2.8	14	84	0	51	25	38	12	23	1.90
307162--307237	14	5.4	14	76	6	64	23	26	23	26	2.00
307160--307227	29	2.3	29	83	14	95	25	27	22	25	1.99
307160--307223	15	4.5	13	77	13	56	23	26	23	26	2.00
310723--310771	23	2.1	24	96	3	91	38	16	20	24	1.92
315672--315722	19	2.6	20	87	3	77	25	31	17	25	1.97
318521--318585	29	2.2	30	81	15	73	40	7	7	44	1.62
322095--322145	21	2.5	20	78	9	57	23	1	1	72	1.05
326767--326797	14	2.2	14	100	0	62	25	32	12	29	1.93
326731--326834	55	1.9	53	88	9	156	25	25	21	26	1.99
326781--326859	41	1.9	41	89	0	122	27	24	18	29	1.98
334538--334599	23	2.6	24	87	2	90	22	12	22	41	1.88
334538--334605	24	2.9	24	86	2	93	23	11	22	42	1.86
334532--334622	23	3.9	23	80	5	76	24	13	20	41	1.88
334586--334630	23	2.0	23	82	8	56	24	17	22	35	1.95
334636--334691	23	2.4	23	84	0	76	25	12	16	46	1.81
337059--337107	12	4.0	12	91	2	71	10	20	51	18	1.75
338717--338741	4	6.2	4	100	0	50	76	0	0	24	0.80
338974--339166	54	3.6	55	89	6	297	26	18	15	38	1.91
339205--339370	31	5.4	31	66	9	81	33	13	22	30	1.93
343707--343745	16	2.4	16	82	0	51	41	0	10	48	1.37
346367--346423	23	2.5	23	85	5	71	12	19	12	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353842--354079	55	4.3	54	81	3	244	28	23	20	26	1.99
353870--354077	110	1.9	110	86	0	299	28	23	20	27	1.99
354042--354161	28	4.4	28	86	2	163	26	18	23	31	1.97
364045--364103	31	1.9	31	82	6	75	22	5	10	62	1.46
364177--364254	28	2.7	29	76	11	79	30	8	7	52	1.61
366157--366267	55	2.0	55	92	3	188	39	10	10	38	1.75
367678--367707	11	2.8	11	95	5	53	36	0	0	63	0.95
367667--367700	16	2.2	15	89	5	50	32	0	0	67	0.91
370519--370554	17	2.1	18	89	5	56	69	16	0	13	1.19
370532--370590	26	2.3	26	84	0	91	66	8	0	25	1.20
372891--372939	18	2.5	19	78	15	55	59	0	4	36	1.17
373913--373958	19	2.4	19	96	0	83	36	15	23	23	1.93
377556--377609	26	2.1	26	82	6	65	38	9	11	40	1.73
384526--384577	26	2.0	27	85	11	72	71	1	5	21	1.17
384606--384737	9	14.4	9	68	18	51	72	0	3	22	1.05
384633--384711	20	3.8	19	70	28	54	74	1	1	22	0.96
384785--384831	19	2.4	19	75	10	51	65	4	6	23	1.33
385319--385465	37	4.0	37	94	0	249	31	16	12	40	1.85
386072--386185	34	3.3	34	91	3	174	31	9	16	42	1.81
386243--386349	37	2.9	36	91	2	187	38	14	22	24	1.92
387562--387656	32	2.9	32	87	1	136	36	20	11	31	1.88
388704--388777	29	2.6	28	81	16	91	4	17	2	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388714--388777	13	4.8	13	80	17	69	1	17	3	78	0.96
388726--388778	7	7.6	7	75	8	54	1	18	1	77	0.96
388724--388778	14	3.9	15	81	9	71	1	18	1	78	0.94
389100--389133	16	2.1	16	100	0	68	38	8	11	41	1.73
389397--389445	22	2.2	22	82	10	55	30	6	16	46	1.71
391877--391979	27	3.8	27	74	18	90	73	0	7	17	1.11
391929--392005	13	5.9	13	75	13	52	76	1	3	18	1.01
392673--392817	37	3.9	37	96	0	263	33	12	13	40	1.81
394005--394066	15	4.3	15	78	15	76	41	0	3	54	1.16
394004--394094	43	2.1	43	97	0	173	42	0	2	54	1.12
394012--394094	28	3.0	28	82	7	80	43	0	2	54	1.13
394002--394094	15	7.0	14	68	25	60	44	0	2	53	1.12
394035--394102	28	2.4	27	85	4	82	42	0	2	54	1.15
394003--394101	9	11.2	8	71	18	56	42	0	3	54	1.15
394055--394119	28	2.3	28	78	7	69	41	3	6	49	1.43
395509--395565	25	2.2	26	84	9	73	24	17	0	57	1.39
395508--395565	13	4.5	13	75	12	66	24	17	0	58	1.38
397223--397247	10	2.5	10	100	0	50	52	20	0	28	1.47
399542--399573	13	2.5	13	100	0	64	12	0	18	68	1.20
405394--405437	21	2.0	23	86	8	65	36	2	34	27	1.70
405794--405948	64	2.4	63	88	5	233	32	21	16	29	1.95
409005--409079	37	2.0	37	97	0	141	22	22	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414108--414148	21	1.9	22	85	14	59	48	9	4	36	1.58
414482--414535	22	2.5	22	87	0	72	33	25	20	20	1.97
416427--416500	30	2.5	30	97	0	139	20	27	10	41	1.85
422302--422521	104	2.1	103	84	0	287	34	14	13	37	1.85
422928--422960	14	2.4	14	94	0	57	21	33	27	18	1.96
423701--423735	12	2.8	12	86	4	52	25	8	2	62	1.38
424149--424186	15	2.3	17	86	13	53	15	5	5	73	1.19
424181--424222	15	2.7	15	88	7	57	9	2	4	83	0.88
424182--424229	25	1.9	25	83	8	62	10	2	4	83	0.87
424617--424648	8	3.9	8	95	4	55	84	0	15	0	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11