genome.fa.s8610.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2071350--2071482	60	2.2	60	95	0	239	27	27	18	26	1.98
2071498--2071545	19	2.4	20	75	6	53	20	20	20	37	1.95
2071912--2072020	19	5.4	19	76	17	103	31	27	5	35	1.80
2072029--2072082	21	2.6	21	88	2	74	22	20	25	31	1.98
2073712--2073758	24	2.0	24	100	0	94	46	4	12	36	1.62
2075547--2075683	60	2.3	59	83	2	193	29	16	24	29	1.97
2075737--2075779	20	2.2	20	82	0	50	18	4	16	60	1.52
2076368--2076436	6	10.7	6	74	13	57	18	17	18	44	1.86
2076368--2076452	13	6.5	13	79	0	80	18	20	20	41	1.91
2076368--2076449	26	3.2	26	94	0	137	18	18	20	42	1.89
2076354--2076452	39	2.6	39	81	1	110	19	18	20	42	1.90
2076497--2076527	16	1.9	16	93	0	53	35	0	6	58	1.24
2078703--2078761	31	1.9	31	89	0	91	42	8	6	42	1.61
2078779--2078821	16	2.7	16	100	0	86	23	0	6	69	1.12
2083123--2083147	13	1.9	13	100	0	50	36	0	16	48	1.46
2083939--2084009	22	3.5	21	81	9	76	32	18	21	28	1.96
2084337--2084667	54	6.1	54	89	0	491	33	16	17	31	1.93
2090323--2090381	2	29.5	2	100	0	118	50	0	0	49	1.00
2092743--2092784	22	1.9	22	85	9	59	54	2	0	42	1.13
2093822--2094270	229	2.0	227	93	1	774	45	8	7	39	1.61
2094340--2094378	20	2.0	20	100	0	78	56	12	15	15	1.68
2094501--2094547	20	2.4	19	82	10	67	53	10	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2094510--2094552	20	2.3	19	88	11	63	51	11	16	20	1.75
2096777--2096841	21	3.1	21	80	6	69	40	15	29	15	1.88
2096875--2096940	33	2.0	33	90	0	105	28	0	48	22	1.51
2098727--2098775	19	2.6	19	90	6	73	30	4	10	55	1.52
2098900--2100173	197	6.5	197	98	0	2430	36	14	16	32	1.90
2101631--2101692	18	3.4	18	79	0	79	37	9	35	17	1.83
2101631--2101716	6	14.3	6	77	0	64	37	8	34	19	1.82
2101646--2101720	3	25.0	3	73	0	60	36	6	34	22	1.81
2101634--2101712	36	2.2	36	90	0	122	35	8	35	20	1.84
2101634--2101716	12	6.9	12	83	0	94	36	8	34	20	1.83
2103185--2103805	181	3.4	182	95	1	1077	36	14	16	33	1.89
2106285--2106336	22	2.3	22	90	3	77	36	5	15	42	1.71
2106762--2106798	18	2.1	18	89	0	56	32	5	10	51	1.60
2106754--2106800	24	2.0	24	86	0	67	34	4	14	46	1.64
2107053--2107138	39	2.2	39	89	2	138	48	19	12	18	1.80
2107552--2107622	23	3.2	23	84	8	92	33	4	23	38	1.75
2107558--2107627	21	3.2	21	81	4	77	32	4	24	38	1.75
2107981--2108037	22	2.6	22	91	0	96	33	5	22	38	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!