genome.fa.s8610.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629799--631157	199	6.8	199	95	0	2459	36	14	16	31	1.89
629799--631157	399	3.4	399	97	0	2517	36	14	16	31	1.89
632619--632680	18	3.4	18	79	0	79	37	9	35	17	1.83
632634--632714	3	27.0	3	78	0	81	34	6	34	24	1.81
632622--632698	36	2.1	36	90	0	118	35	9	35	20	1.85
634180--634851	183	3.7	182	96	1	1193	33	14	17	34	1.90
637318--637382	25	2.6	25	80	0	85	35	9	13	41	1.77
637728--637800	23	3.2	23	88	0	101	34	4	21	39	1.73
638228--638264	18	2.1	18	89	0	56	32	5	10	51	1.60
638220--638266	24	2.0	24	86	0	67	34	4	14	46	1.64
638539--638604	34	1.9	34	96	0	123	48	18	16	16	1.82
638960--639004	21	2.1	21	83	4	54	40	8	11	40	1.72
639022--639094	23	3.2	23	88	0	101	34	4	21	39	1.73
639240--639306	30	2.2	29	82	10	73	52	4	0	43	1.21
646368--646397	2	15.5	2	93	6	53	46	0	0	53	1.00
649328--649417	42	2.1	42	85	4	119	27	5	20	46	1.72
649545--649614	21	3.5	21	73	23	71	44	0	0	55	0.99
649580--649612	18	1.9	17	88	11	50	42	0	0	57	0.98
649534--649614	11	8.3	10	74	19	73	41	1	0	56	1.07
650058--650158	30	3.4	30	88	1	123	39	9	8	41	1.70
651156--651180	2	12.5	2	100	0	50	52	0	0	48	1.00
653628--653671	12	3.3	13	81	15	54	34	9	13	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654094--654249	65	2.4	64	84	3	206	29	21	17	31	1.96
660035--660106	23	3.2	22	70	7	56	23	25	20	30	1.99
662699--662854	65	2.4	65	86	3	208	27	22	18	31	1.97
663612--663686	21	3.4	22	80	9	82	14	25	26	33	1.94
667711--667746	19	1.9	19	88	5	56	41	13	11	33	1.80
669581--669628	24	2.0	23	88	11	71	41	4	0	54	1.20
672088--672147	12	4.8	12	80	11	75	18	60	1	20	1.45
672116--672149	15	2.3	15	89	0	50	11	67	0	20	1.21
672007--672133	27	4.7	27	88	1	166	20	49	6	23	1.71
672033--672149	27	4.3	27	86	2	92	18	52	5	23	1.66
674348--674594	30	8.2	30	91	0	368	33	25	31	10	1.89
675453--675491	6	6.5	6	100	0	78	17	66	0	15	1.25
677812--677863	22	2.4	21	74	3	50	48	3	11	36	1.58
678211--678255	4	11.0	4	81	13	56	46	0	0	53	1.00
678200--678257	18	3.4	17	81	18	66	46	1	0	51	1.11
678215--678262	14	3.4	14	80	13	53	47	0	0	52	1.00
682431--682590	64	2.5	62	80	11	171	30	25	16	27	1.97
682488--682633	64	2.3	63	82	9	163	30	23	15	29	1.96
685645--685707	26	2.4	26	94	0	108	19	14	22	44	1.86
693201--693298	45	2.2	44	85	8	128	27	23	20	28	1.99
693221--693301	23	3.6	22	75	14	85	25	24	22	27	2.00
695571--695608	20	1.9	20	100	0	76	39	13	0	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695977--696042	19	3.5	19	95	4	125	31	30	16	21	1.95
699088--699243	80	2.0	80	94	2	278	30	18	18	32	1.95
702624--702661	3	12.7	3	100	0	76	34	0	0	65	0.93
703200--703247	23	2.0	24	84	11	64	68	6	25	0	1.12
703400--703438	22	1.9	20	85	15	53	23	2	35	38	1.68
704116--704183	30	2.3	30	81	0	82	17	16	5	60	1.55
709063--709125	32	2.0	31	90	3	99	26	15	26	30	1.96
709416--709590	68	2.6	67	90	4	257	28	21	12	37	1.90
709353--709591	64	3.7	66	81	8	267	29	20	11	37	1.89
709471--709598	37	3.6	36	70	17	124	25	22	13	38	1.91
709471--709657	103	1.8	104	82	3	243	27	21	12	37	1.90
710204--710280	3	25.7	3	84	7	68	37	5	0	57	1.21
710615--710652	11	3.3	11	92	7	58	44	7	18	28	1.78
720602--720648	24	2.0	24	83	8	60	51	8	4	36	1.52
721443--721510	34	2.0	35	88	2	102	33	14	25	26	1.94
722358--722407	19	2.6	19	74	0	55	54	4	14	28	1.58
723748--723807	20	3.0	20	80	2	68	36	13	15	35	1.86
725818--725852	14	2.5	14	90	0	52	57	0	2	40	1.14
726055--726084	15	2.0	15	100	0	60	46	13	13	26	1.80
727090--727131	13	3.2	13	89	0	66	26	21	16	35	1.94
727103--727269	85	2.0	84	82	8	205	32	19	17	30	1.95
729922--730422	203	2.4	204	85	7	665	45	19	11	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732781--733187	139	2.9	136	79	8	426	45	15	13	26	1.82
735989--736013	12	2.1	12	100	0	50	76	0	0	24	0.80
741331--741358	12	2.3	12	100	0	56	14	25	42	17	1.87
744580--744647	16	4.3	15	70	23	50	58	5	11	23	1.55
746386--746441	21	2.6	22	77	8	62	39	19	14	26	1.90
746558--746612	21	2.7	20	83	8	74	18	21	20	40	1.92
746558--746622	21	3.2	19	79	14	67	20	18	24	36	1.94
746930--746977	20	2.4	20	82	6	62	41	2	16	39	1.60
748391--748439	20	2.5	20	83	3	55	53	6	12	28	1.62
750514--750583	20	3.5	19	73	9	68	35	17	11	35	1.85
753225--753270	24	2.0	23	83	8	58	50	8	6	34	1.59
756234--756369	38	3.6	38	81	2	112	36	8	22	32	1.84
756261--756378	19	6.2	19	84	0	128	35	9	24	30	1.87
756233--756368	57	2.4	56	80	3	164	36	8	22	33	1.83
762014--762078	26	2.5	26	80	11	71	67	7	1	23	1.25
762930--763087	53	3.0	53	86	0	235	39	18	17	24	1.92
763448--763609	53	3.1	53	84	0	216	39	18	17	24	1.92
762771--763811	518	2.0	518	98	0	1992	40	17	13	28	1.88
764258--764306	21	2.4	20	83	10	55	34	22	6	36	1.79
769761--769922	53	3.1	53	90	0	252	38	18	16	26	1.92
770488--770530	22	1.9	23	90	4	70	20	30	11	37	1.89
770605--770653	21	2.4	20	86	10	64	34	26	6	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773531--773770	36	6.7	36	77	4	182	32	14	15	37	1.88
773517--773706	72	2.6	72	83	1	229	33	15	15	35	1.90
773517--773770	72	3.5	72	77	3	224	33	14	15	36	1.89
773544--773770	108	2.1	108	80	1	240	33	14	14	37	1.88
774013--774061	13	3.6	13	91	5	71	42	14	18	24	1.87
780867--780916	24	2.1	24	85	7	66	58	12	2	28	1.45
783237--783279	14	3.0	15	83	10	54	76	6	0	16	0.99
785726--785760	18	1.9	18	88	0	52	28	17	0	54	1.43
787063--787103	18	2.3	18	100	0	82	14	17	51	17	1.77
787055--787085	13	2.4	13	94	0	53	16	19	48	16	1.81
790948--790997	24	2.1	24	85	7	66	58	12	2	28	1.45
800226--800274	4	12.8	4	80	8	57	44	22	2	30	1.64
801150--801182	2	17.0	2	87	6	50	48	0	3	48	1.17
807398--807512	39	2.9	39	76	10	135	32	22	26	19	1.97
809180--809233	20	2.7	20	72	11	56	37	22	14	25	1.93
810550--810588	18	2.2	18	100	0	78	35	30	0	33	1.58
813174--813292	39	3.1	38	83	2	130	32	22	26	18	1.97
816594--816629	18	2.0	18	100	0	72	44	11	11	33	1.75
824385--825431	94	11.0	94	92	2	1541	33	25	18	22	1.96
825245--825422	87	2.0	87	94	0	311	32	26	18	23	1.97
833219--833263	18	2.5	18	89	7	65	13	22	28	35	1.92
833218--833270	18	2.9	18	77	5	63	15	20	30	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837305--837347	21	2.0	21	90	0	68	32	27	23	16	1.96
837370--837409	19	2.0	20	85	4	55	25	30	30	15	1.95
837891--838108	103	2.1	103	96	0	409	23	13	25	37	1.91
839369--839432	26	2.4	27	92	5	112	46	9	15	28	1.77
844250--844292	21	2.0	21	90	0	68	32	27	23	16	1.96
844320--844356	19	1.9	19	88	0	56	24	35	29	10	1.89
844837--845051	103	2.1	103	94	0	376	25	12	24	37	1.91
845073--845133	23	2.7	23	82	5	70	24	24	22	27	2.00
846646--846678	2	16.5	2	100	0	66	51	0	0	48	1.00
846833--846884	13	4.0	13	84	0	68	36	19	19	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11