genome.fa.s8610.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073847--1074669	105	7.9	105	92	1	1282	33	25	17	23	1.97
1075216--1075317	34	2.8	37	89	10	167	43	14	14	27	1.85
1075216--1075351	37	3.8	35	84	9	168	41	13	14	29	1.85
1075708--1075750	18	2.5	17	85	7	61	25	4	2	67	1.22
1075720--1075828	57	1.9	55	80	14	125	33	2	1	62	1.20
1077791--1077840	15	3.5	15	67	10	50	32	10	4	54	1.52
1077790--1077855	28	2.4	28	94	0	114	31	12	7	48	1.68
1079600--1079678	2	39.5	2	100	0	158	50	0	0	49	1.00
1080052--1080136	38	2.2	38	80	0	89	43	7	16	32	1.75
1081852--1082007	65	2.4	65	85	5	201	30	17	19	32	1.95
1082973--1083027	27	2.0	27	82	0	65	29	10	43	16	1.82
1084555--1084637	23	3.7	23	68	9	64	27	20	24	27	1.99
1090950--1090988	20	1.9	21	94	5	71	53	2	17	25	1.56
1093406--1093465	30	2.0	30	96	0	111	33	25	20	21	1.97
1095728--1095767	2	20.0	2	100	0	80	50	0	0	50	1.00
1100425--1100499	27	2.8	26	67	11	62	45	6	9	38	1.63
1112645--1112691	20	2.3	20	85	10	60	34	19	21	25	1.96
1112706--1112737	14	2.3	14	100	0	64	31	6	25	37	1.81
1120435--1120498	22	3.2	20	78	10	76	34	14	21	29	1.93
1120839--1121387	55	10.0	55	93	0	882	34	12	19	33	1.89
1123812--1123856	20	2.2	20	100	0	90	33	15	20	31	1.93
1126553--1126676	15	8.1	15	67	23	55	45	3	3	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126630--1126680	18	2.7	19	82	11	52	45	0	1	52	1.12
1129884--1129924	15	2.7	16	77	11	50	2	2	26	68	1.15
1130465--1130527	3	20.7	3	87	12	69	61	0	0	38	0.96
1130477--1130650	62	2.7	70	73	17	127	54	4	0	40	1.23
1130487--1130638	2	79.0	2	73	23	123	53	3	0	41	1.24
1149063--1149122	24	2.5	24	88	0	93	30	18	23	28	1.98
1151668--1151712	6	7.3	6	80	5	54	73	4	2	20	1.11
1152626--1152661	18	2.0	18	88	0	54	55	0	5	38	1.23
1155261--1155435	54	3.2	53	83	4	208	36	19	17	27	1.94
1156721--1156895	54	3.2	54	84	1	217	36	20	17	26	1.94
1158180--1158354	54	3.2	53	86	4	244	35	19	18	26	1.95
1159624--1159934	54	5.7	54	85	1	374	38	19	16	25	1.92
1159620--1159934	108	2.9	108	83	1	416	38	19	16	25	1.92
1159618--1159955	162	2.1	163	85	1	464	37	19	16	25	1.93
1167006--1167194	74	2.5	73	85	5	256	21	21	28	28	1.99
1169273--1169318	13	3.5	13	82	5	58	47	8	8	34	1.65
1169775--1169896	21	5.7	22	75	12	87	30	18	28	22	1.97
1174971--1175007	19	2.0	19	89	5	58	18	21	32	27	1.97
1174973--1175157	74	2.5	74	86	4	248	22	20	27	30	1.98
1175431--1175703	54	5.1	54	84	3	336	35	18	18	26	1.94
1176323--1176543	2	118.5	2	69	24	146	51	4	0	42	1.29
1176293--1176546	7	35.6	7	71	17	152	52	5	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183472--1183515	20	2.2	20	95	0	79	36	22	20	20	1.95
1183584--1183639	29	1.9	29	92	0	94	33	21	14	30	1.93
1187177--1187236	21	2.9	22	87	5	72	36	11	21	30	1.89
1187186--1187241	21	2.8	20	86	5	76	37	10	23	28	1.88
1187252--1187301	20	2.5	20	80	0	55	32	8	26	34	1.85
1189888--1189913	2	13.0	2	100	0	52	50	0	0	50	1.00
1191342--1191378	18	2.1	18	100	0	74	51	0	0	48	1.00
1192455--1192763	4	74.8	4	68	19	81	20	5	0	73	1.09
1192476--1192529	17	3.1	18	76	13	58	22	7	0	70	1.12
1192520--1192922	12	31.2	13	71	17	158	17	6	1	74	1.12
1192520--1192898	9	39.8	10	70	20	117	17	7	1	73	1.13
1192542--1192798	52	4.9	52	77	15	210	17	5	0	75	1.04
1192564--1192937	34	10.9	34	69	20	126	16	6	1	74	1.11
1192809--1192883	25	2.8	26	77	20	75	18	9	0	72	1.11
1192544--1192873	147	2.2	148	78	13	345	17	6	1	74	1.09
1192552--1192924	49	7.9	47	69	18	145	17	6	1	74	1.10
1192504--1192937	9	45.9	9	67	16	116	17	6	1	74	1.12
1195428--1195591	46	3.6	45	82	9	199	34	22	4	38	1.76
1195690--1195753	33	1.9	33	96	0	119	29	23	18	28	1.98
1204108--1204331	50	4.4	50	70	16	151	20	6	1	71	1.14
1204151--1204192	17	2.5	17	84	3	50	16	4	2	76	1.07
1204139--1204200	32	1.9	32	84	12	83	17	4	1	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204178--1204462	9	30.6	9	68	25	109	16	9	0	72	1.14
1204188--1204422	15	15.5	15	71	20	145	17	9	0	72	1.14
1204294--1204408	33	3.6	32	70	20	96	14	11	0	73	1.09
1204342--1204422	6	13.5	6	75	14	62	14	13	0	71	1.14
1204334--1204432	33	2.8	34	76	14	103	15	12	0	72	1.12
1207908--1207983	23	3.3	23	81	0	89	25	21	19	34	1.96
1207641--1208416	387	2.0	387	98	0	1507	34	13	19	32	1.91
1208295--1208364	23	3.0	23	80	0	86	24	22	20	32	1.97
1208520--1208590	6	11.8	6	78	0	79	40	1	22	35	1.63
1210770--1210809	16	2.5	16	87	0	62	47	7	17	27	1.74
1213041--1213099	16	3.6	17	73	17	63	32	6	20	40	1.78
1213185--1213276	23	4.0	23	77	2	105	18	21	25	34	1.96
1213175--1213271	46	2.1	46	88	0	140	19	23	22	34	1.97
1213187--1213283	46	2.1	46	84	0	122	18	22	24	34	1.96
1213388--1213462	6	12.3	6	77	2	69	42	1	21	34	1.61
1213398--1213468	18	3.9	18	83	3	81	38	2	23	35	1.70
1213417--1213468	12	4.3	12	85	0	68	34	1	25	38	1.67
1214970--1215025	20	2.6	22	83	5	71	42	21	10	25	1.85
1215994--1216072	36	2.2	36	100	0	158	21	18	25	34	1.96
1224822--1224858	17	2.2	17	100	0	74	37	24	16	21	1.93
1225285--1225328	19	2.3	19	96	0	79	40	18	22	18	1.91
1236610--1236862	20	12.6	20	75	7	158	34	18	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1236742--1236862	41	3.0	41	83	1	154	40	17	19	22	1.91
1237073--1237125	27	2.0	27	85	3	72	33	37	9	18	1.83
1237398--1237469	20	3.6	19	81	5	81	51	18	16	13	1.77
1237496--1237555	19	3.1	19	90	4	93	11	23	16	48	1.79
1239220--1239572	94	3.8	94	93	2	563	21	13	18	47	1.82
1239674--1239731	19	3.0	19	87	5	89	50	15	22	12	1.77
1239700--1239764	33	1.9	34	90	3	105	49	26	16	7	1.73
1239733--1239782	20	2.5	20	100	0	100	52	28	14	6	1.65
1239813--1239864	21	2.6	20	78	6	61	13	19	21	46	1.84
1241863--1241916	19	2.8	19	88	2	81	51	16	14	16	1.76
1241934--1242084	19	8.7	19	62	21	71	11	23	19	45	1.82
1241938--1242064	33	3.8	33	89	4	193	11	22	18	47	1.80
1242037--1242130	20	4.7	20	72	13	68	21	20	23	35	1.96
1244618--1244669	24	2.2	24	82	6	61	38	19	17	25	1.93
1245523--1245610	21	4.3	21	87	4	101	38	15	19	26	1.92
1245528--1245603	21	3.7	21	91	1	109	40	15	21	22	1.90
1245643--1245685	21	2.0	21	86	4	59	37	16	25	20	1.93
1246281--1246323	22	1.9	23	90	4	70	48	2	0	48	1.14
1246461--1246507	23	2.1	23	84	7	62	51	0	0	48	1.00
1246461--1246523	23	2.8	22	77	13	58	47	0	3	49	1.17
1247397--1247452	23	2.3	23	84	6	67	46	1	1	50	1.22
1250091--1250448	183	2.0	183	99	0	707	28	21	10	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250783--1250846	31	2.1	31	100	0	128	43	21	9	25	1.82
1254074--1254132	31	1.9	31	92	0	100	40	6	10	42	1.65
1254144--1254194	22	2.4	22	83	9	61	56	7	0	35	1.28
1254159--1254206	22	2.2	22	85	7	62	56	12	0	31	1.37
1254201--1254253	14	3.5	14	76	18	61	56	3	0	39	1.17
1254179--1254633	32	15.5	32	67	25	199	51	12	0	35	1.40
1254242--1254284	22	2.0	22	100	0	86	51	13	0	34	1.42
1254210--1255005	54	14.9	54	74	16	669	52	13	0	34	1.41
1254244--1254292	22	2.2	22	88	3	71	55	14	0	30	1.40
1254162--1254791	80	7.8	80	84	8	782	52	13	0	34	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11