genome.fa.s8610.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
846696--846861	83	2.0	84	85	4	228	31	16	21	30	1.95
846713--846883	83	2.1	83	82	2	200	30	17	21	30	1.96
849762--849817	22	2.6	22	86	8	71	35	16	26	21	1.94
850703--850751	18	2.7	18	87	0	80	18	22	30	28	1.97
852414--852482	23	3.0	23	86	0	93	28	26	24	20	1.99
852501--852818	103	3.1	102	96	1	573	36	24	11	27	1.90
854185--854244	20	2.9	21	90	7	95	18	26	25	30	1.98
855020--856204	4	296.5	4	97	0	2230	25	0	25	49	1.51
857646--857714	36	1.9	36	84	0	93	37	8	24	28	1.85
857907--858129	114	2.0	113	84	7	290	30	16	17	35	1.92
858599--858687	32	2.8	31	88	3	124	57	6	16	19	1.61
858599--858696	31	3.1	31	86	2	133	54	6	18	21	1.65
862485--862536	13	3.7	13	76	18	50	17	19	44	19	1.87
862487--862519	17	1.9	17	93	0	57	18	24	39	18	1.92
864651--864745	43	2.2	43	100	0	190	36	37	10	14	1.81
867328--867357	13	2.3	13	100	0	60	13	23	46	16	1.82
870666--870935	131	2.1	131	100	0	540	39	17	12	31	1.87
871652--871680	13	2.2	13	100	0	58	37	6	6	48	1.57
873787--873868	24	3.4	23	82	12	78	54	0	2	42	1.13
875017--875063	15	3.2	14	77	19	51	65	4	2	27	1.22
875670--875703	17	2.0	17	94	0	59	67	5	11	14	1.39
882705--882752	18	2.6	18	78	21	55	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887443--887480	2	19.0	2	100	0	76	50	0	0	50	1.00
888358--888445	8	10.1	8	73	18	52	18	4	1	76	1.02
888363--888445	19	4.4	18	74	19	55	18	4	1	75	1.04
888395--888445	15	3.5	15	83	2	59	17	1	1	78	0.94
890930--890973	22	2.0	22	82	8	54	29	13	2	54	1.51
891008--891112	37	2.8	37	85	0	138	41	14	14	29	1.85
891602--891639	20	1.9	20	88	0	58	26	7	2	63	1.35
897217--897752	183	2.9	183	95	0	950	27	20	21	30	1.98
898911--899054	72	1.9	76	82	8	181	29	17	12	40	1.86
899083--899235	39	3.6	39	68	19	117	28	22	13	35	1.92
899138--899457	106	3.1	106	91	3	510	30	20	11	36	1.89
899352--899432	36	2.3	36	84	2	110	27	20	13	38	1.90
899632--900262	105	6.0	105	90	2	905	33	26	18	21	1.96
901279--901307	2	14.5	2	100	0	58	48	0	0	51	1.00
901342--901409	24	3.0	23	75	10	68	25	5	2	66	1.28
913488--913643	70	2.2	71	84	7	212	59	11	18	10	1.59
916451--916629	9	20.5	8	74	17	51	21	3	2	73	1.09
916460--916503	13	3.4	12	90	9	61	18	2	2	77	0.98
916462--916517	27	2.0	28	82	3	69	17	3	1	76	1.01
916556--916623	3	23.7	3	88	11	99	29	1	0	69	0.98
916867--916914	9	5.2	9	82	2	60	14	2	2	81	0.88
916859--916957	26	4.1	22	70	20	74	15	3	5	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916865--916940	27	2.7	29	82	8	95	15	3	5	75	1.14
916870--916940	28	2.5	28	84	6	90	15	4	5	74	1.16
918494--918576	29	2.8	29	92	1	139	43	9	14	32	1.78
923262--923344	29	2.8	29	92	1	139	43	9	14	32	1.78
926332--926379	20	2.2	21	85	10	62	27	6	6	60	1.45
929447--929503	20	2.9	19	85	10	71	19	24	7	49	1.73
929457--929503	20	2.3	20	96	0	85	21	25	4	48	1.68
929466--929510	20	2.2	20	88	0	63	22	31	4	42	1.73
930088--930170	29	2.8	29	90	1	130	43	8	14	33	1.76
934857--934939	29	2.8	29	92	1	139	43	9	14	32	1.78
942804--942842	16	2.4	16	86	0	51	23	17	17	41	1.91
943259--943333	23	3.2	23	80	17	68	74	8	4	13	1.18
943269--943360	23	4.0	22	80	15	91	78	7	3	10	1.07
943295--943326	17	1.9	17	93	6	57	75	12	6	6	1.19
943278--943409	40	3.5	36	75	17	126	77	8	2	12	1.08
943351--943421	23	3.2	22	80	13	83	78	5	1	14	0.99
943269--943420	16	9.4	16	70	22	97	77	7	2	12	1.07
943273--943428	18	8.2	18	72	16	70	77	7	3	12	1.08
944432--944469	18	2.2	17	90	4	58	42	10	0	47	1.38
944484--944876	13	27.5	16	70	25	262	42	0	1	55	1.14
944484--944876	8	44.0	10	71	24	262	42	0	1	55	1.14
944484--944876	18	21.3	20	70	24	200	42	0	1	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944484--944872	35	11.1	35	80	14	194	42	0	1	55	1.14
944627--944876	5	48.8	5	86	13	334	40	0	0	60	0.97
944957--944989	2	17.0	2	93	6	59	51	0	0	48	1.00
947298--947348	21	2.4	21	93	0	84	39	15	21	23	1.92
950433--950490	23	2.5	23	83	5	73	22	27	18	31	1.97
950709--950737	3	9.7	3	100	0	58	34	0	0	65	0.93
963909--963955	19	2.3	21	78	7	53	59	10	0	29	1.31
965415--965444	15	2.0	15	93	0	51	63	0	10	26	1.26
966059--966111	26	2.0	26	89	7	81	30	11	18	39	1.86
969657--969756	24	4.2	23	72	10	76	22	12	17	49	1.79
971827--971860	15	2.1	16	89	10	52	17	35	23	23	1.95
975751--975804	21	2.6	22	82	11	78	38	3	0	57	1.17
975762--975931	30	6.0	27	71	15	112	35	5	1	57	1.32
975938--976018	26	3.1	24	75	19	65	55	1	3	39	1.25
975972--976027	26	2.0	28	90	10	89	57	3	3	35	1.34
975976--976036	26	2.3	27	80	11	72	50	3	4	40	1.40
976389--976433	23	2.0	22	86	4	63	46	0	2	51	1.13
976841--976933	23	4.0	23	72	13	66	47	1	0	51	1.07
976841--976905	27	2.4	26	80	12	78	49	1	0	49	1.10
976900--976944	21	2.1	21	88	8	65	44	0	0	55	0.99
976900--976944	10	4.3	11	78	15	51	44	0	0	55	0.99
976877--977025	54	2.8	51	78	16	130	45	0	2	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977757--977831	23	3.4	22	73	15	64	37	0	1	61	1.05
978510--978556	19	2.6	18	83	6	58	55	8	4	31	1.49
979453--979495	2	21.5	2	100	0	86	51	0	0	48	1.00
985063--985088	9	2.9	9	100	0	52	69	7	0	23	1.14
985222--985838	309	2.0	309	98	0	1189	37	14	18	29	1.90
986107--986147	19	2.2	20	86	8	59	58	14	4	21	1.55
1003465--1003582	58	2.1	56	87	6	166	46	11	21	21	1.81
1003529--1003707	92	2.0	90	84	7	240	52	12	11	23	1.71
1004479--1004523	13	3.4	13	80	17	56	44	8	0	46	1.34
1005071--1005150	4	20.0	4	94	0	142	27	50	22	0	1.50
1010600--1011237	136	4.7	135	86	3	877	26	21	16	34	1.95
1012241--1012299	11	5.9	10	77	15	52	1	18	1	77	0.93
1012245--1012302	20	2.9	20	77	7	64	1	18	1	77	0.94
1015710--1015740	7	4.4	7	91	0	53	67	0	12	19	1.22
1030203--1030248	20	2.3	20	100	0	92	30	4	13	52	1.59
1034543--1034620	37	2.1	37	90	0	120	39	24	14	21	1.90
1038498--1038547	17	2.9	17	100	0	100	30	30	16	24	1.96
1041760--1041821	21	2.9	22	78	9	74	22	0	25	51	1.48
1041762--1041828	14	4.8	14	81	0	71	20	0	25	53	1.46
1041790--1041834	21	2.1	21	83	0	54	17	0	24	57	1.40
1042341--1042399	11	5.5	11	71	15	52	40	1	1	55	1.20
1044708--1044772	21	3.0	21	86	8	87	58	0	3	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052394--1052427	18	2.0	17	88	11	52	23	0	44	32	1.54
1052852--1053465	66	9.3	66	94	0	1025	33	17	20	29	1.95
1053541--1053583	19	2.3	19	95	0	77	53	18	4	23	1.63
1067331--1067373	18	2.5	17	85	7	61	25	4	2	67	1.22
1071416--1072135	183	3.9	183	95	0	1289	27	20	21	30	1.98
1073276--1073451	72	2.4	75	83	7	209	26	17	13	42	1.86
1073291--1073398	36	3.0	36	75	2	119	26	14	13	44	1.83
1073467--1073619	39	3.6	39	68	21	110	30	20	13	35	1.91
1073469--1073631	90	1.8	89	95	1	299	32	19	12	34	1.90
1073546--1073821	106	2.7	102	88	9	402	29	19	11	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11