genome.fa.s8610.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008610.1 Hibiscus syriacus cultivar Beakdansim tig00111566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2108335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1465825--1465862	16	2.4	16	95	0	67	23	10	44	21	1.83
1465825--1465868	16	2.8	16	89	0	52	25	11	43	20	1.85
1467666--1467707	21	2.0	21	95	0	75	30	9	35	23	1.87
1469995--1470020	2	13.0	2	100	0	52	50	0	0	50	1.00
1470718--1470791	20	3.5	20	82	8	94	33	13	22	29	1.93
1471193--1471343	79	1.9	79	89	2	232	35	9	26	29	1.87
1471281--1471480	45	4.4	45	86	3	181	37	9	24	29	1.86
1471318--1471536	45	4.9	45	85	2	278	41	9	20	29	1.83
1471321--1471575	135	1.9	134	79	8	284	40	8	19	30	1.82
1474392--1474417	12	2.2	12	100	0	52	23	0	53	23	1.46
1475106--1475163	22	2.7	22	91	2	100	20	27	25	25	1.99
1478971--1479010	21	1.9	21	85	10	55	35	10	2	52	1.48
1482274--1482323	20	2.5	20	83	0	55	46	20	16	18	1.85
1482331--1482386	23	2.6	21	83	8	60	25	19	17	37	1.94
1482345--1482392	23	2.1	23	92	0	78	29	22	18	29	1.98
1483863--1483961	21	4.7	21	78	10	87	24	21	31	23	1.98
1483863--1483965	42	2.5	41	75	13	111	24	21	32	22	1.98
1486105--1486151	20	2.4	19	82	6	58	46	21	14	17	1.83
1486165--1486198	14	2.4	14	95	0	59	8	17	23	50	1.74
1486149--1486211	20	3.5	20	71	24	75	7	17	23	50	1.72
1486181--1486224	20	2.2	20	84	8	54	13	13	18	54	1.71
1489426--1489476	20	2.5	22	84	12	72	60	1	3	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1490433--1490985	276	2.0	276	98	0	1070	39	14	12	33	1.84
1491457--1491486	15	2.0	15	100	0	60	26	20	13	40	1.89
1495220--1495293	20	3.5	20	87	8	103	33	13	24	28	1.93
1495203--1495388	96	1.9	96	84	8	245	31	15	23	29	1.95
1495334--1495389	22	2.7	20	89	10	94	28	16	30	25	1.96
1495792--1495943	79	1.9	79	85	2	207	35	9	25	28	1.88
1495794--1495960	79	2.1	79	83	2	201	37	9	25	27	1.87
1495920--1496158	45	5.3	45	84	1	264	39	9	19	32	1.83
1495921--1496179	135	1.9	135	81	4	317	40	8	18	32	1.82
1497110--1497148	2	19.5	2	100	0	78	51	0	0	48	1.00
1506593--1506729	59	2.3	60	85	7	172	24	29	27	18	1.98
1512726--1512785	24	2.5	24	79	10	70	75	0	15	10	1.05
1512722--1512857	9	15.1	8	70	23	60	75	1	16	5	1.07
1512796--1512857	18	3.3	19	84	15	76	79	0	19	1	0.82
1512790--1512852	19	3.5	17	83	14	74	79	1	19	0	0.82
1514795--1515548	55	14.1	53	78	9	483	33	9	16	40	1.81
1514795--1515591	53	14.9	55	78	9	498	32	9	16	41	1.80
1514848--1515416	109	5.3	107	78	7	471	33	9	16	40	1.81
1515147--1515548	155	2.6	155	83	3	499	32	9	17	40	1.83
1515921--1516115	84	2.3	84	82	1	237	26	24	14	33	1.94
1516291--1516404	37	3.2	36	67	12	99	35	17	10	35	1.84
1516292--1516506	82	2.8	75	85	9	285	34	18	9	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1518503--1518579	29	2.7	28	76	13	84	24	7	9	58	1.55
1522392--1522426	15	2.3	15	95	0	61	42	5	28	22	1.76
1530811--1531004	76	2.5	77	86	3	259	22	32	24	20	1.98
1535749--1535785	18	2.1	18	100	0	74	35	27	5	32	1.79
1538012--1538091	33	2.4	33	93	0	142	37	21	13	27	1.91
1560593--1560704	58	1.9	58	83	7	147	41	13	5	40	1.67
1568312--1568390	25	3.1	24	78	19	81	78	1	3	16	0.96
1568347--1568471	54	2.4	53	85	9	159	73	0	5	20	1.08
1569821--1569872	27	2.0	26	88	3	77	51	1	5	40	1.37
1577471--1577592	40	3.1	39	91	2	192	20	16	30	32	1.95
1577637--1577705	7	9.9	7	83	0	84	17	5	26	50	1.68
1577636--1577714	21	3.7	21	91	1	113	17	6	25	50	1.69
1580432--1580502	27	2.6	28	78	12	85	81	1	15	1	0.83
1580440--1580502	18	3.5	17	78	18	56	82	1	15	0	0.74
1580442--1580500	7	8.3	7	83	9	75	83	1	15	0	0.74
1584381--1584430	7	7.0	7	83	2	64	16	4	26	54	1.59
1584381--1584425	14	3.2	14	93	0	72	17	4	24	53	1.62
1592006--1592040	18	2.0	17	94	5	61	80	0	5	14	0.89
1592032--1592171	35	3.9	35	73	14	99	70	1	5	22	1.17
1592032--1592100	34	2.0	36	85	5	97	72	1	2	23	1.06
1592133--1592177	16	2.8	16	83	12	65	68	2	2	26	1.12
1593451--1593502	27	2.0	26	88	3	77	51	1	5	40	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1596243--1597978	580	3.0	577	95	0	3100	37	17	11	33	1.86
1598494--1598878	44	8.9	43	87	2	429	33	24	23	17	1.96
1598494--1598874	88	4.4	86	88	3	489	33	24	23	18	1.96
1602820--1602865	20	2.4	19	85	7	67	34	10	26	28	1.90
1603621--1603667	19	2.5	19	96	0	85	51	31	8	8	1.63
1604000--1604043	22	2.0	21	82	4	52	11	13	38	36	1.81
1604639--1604677	21	1.9	21	94	5	71	41	10	17	30	1.83
1607355--1607379	12	2.1	12	100	0	50	40	8	8	44	1.63
1607748--1607805	29	2.0	29	83	12	75	46	0	13	39	1.44
1608367--1608606	66	3.6	66	85	2	302	30	12	25	31	1.93
1609994--1610172	64	2.8	63	81	8	209	29	17	24	28	1.97
1618632--1618789	64	2.5	64	83	3	185	29	17	24	29	1.97
1619650--1619706	14	4.4	14	80	17	68	54	26	12	7	1.63
1619644--1619691	10	4.4	10	78	19	51	56	25	10	8	1.61
1619644--1619705	24	2.6	24	94	0	106	54	25	11	8	1.63
1622349--1622447	50	2.0	50	87	0	144	22	31	13	33	1.92
1624192--1624227	2	18.0	2	100	0	72	50	0	0	50	1.00
1624214--1624318	25	4.3	25	76	12	101	43	0	11	43	1.46
1624218--1624318	47	2.2	46	82	8	123	43	0	11	43	1.48
1624299--1624341	17	2.6	16	82	10	50	37	2	9	51	1.47
1624365--1624425	12	4.5	13	78	19	54	9	9	0	80	0.91
1624366--1624433	7	9.9	7	88	4	68	10	7	1	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625885--1625920	2	18.0	2	100	0	72	50	0	0	50	1.00
1632117--1632163	13	4.0	13	74	25	59	46	0	8	44	1.33
1632118--1632161	21	2.1	21	100	0	88	47	0	9	43	1.35
1632117--1632185	34	2.0	35	86	8	97	47	0	8	43	1.34
1632122--1632188	21	3.0	24	82	16	74	49	0	8	41	1.34
1632154--1632201	22	2.2	22	88	7	71	50	2	6	41	1.39
1632425--1632469	20	2.2	21	80	11	58	31	17	24	26	1.97
1637520--1638129	54	11.3	54	91	1	967	19	23	22	34	1.97
1654588--1654627	14	2.9	14	85	10	55	0	30	0	70	0.88
1661511--1661555	9	5.1	9	81	5	56	48	4	0	46	1.22
1661524--1661555	17	1.9	16	93	6	55	50	3	0	46	1.17
1661542--1661601	26	2.3	25	81	13	68	50	0	11	38	1.39
1661560--1661660	42	2.4	42	82	9	116	43	2	11	41	1.56
1661624--1661675	16	3.2	16	81	5	59	40	1	9	48	1.47
1661578--1661675	17	5.4	17	73	18	72	41	3	12	42	1.57
1669014--1669073	29	2.1	29	90	6	95	26	26	33	13	1.93
1669444--1669484	15	2.7	15	88	0	64	21	0	19	58	1.39
1680775--1680873	52	1.9	52	91	0	162	31	19	15	34	1.92
1681049--1681762	91	7.9	91	93	1	1184	24	22	16	36	1.94
1682086--1682258	36	4.9	36	74	13	135	36	12	21	29	1.90
1682123--1682248	67	1.9	67	83	0	162	34	11	20	33	1.88
1682190--1682339	36	4.0	36	74	11	115	40	11	18	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1682055--1682258	103	2.0	103	83	3	259	36	11	22	29	1.89
1682788--1683232	39	11.9	39	85	5	388	34	16	21	27	1.95
1682790--1683239	108	4.0	115	85	4	478	34	16	21	26	1.95
1683013--1683113	21	5.4	20	65	26	69	36	13	25	23	1.92
1682799--1683423	36	17.0	36	79	9	430	34	16	22	27	1.94
1683214--1683305	15	5.7	15	74	14	85	34	17	27	20	1.95
1683106--1683379	87	3.1	87	73	14	247	35	15	23	25	1.94
1683061--1683341	51	5.4	51	77	10	289	36	15	23	24	1.94
1683293--1683426	39	3.5	39	82	5	150	34	15	19	30	1.93
1684891--1684934	9	4.8	9	86	5	52	4	15	0	79	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11