Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008693.1 Hibiscus syriacus cultivar Beakdansim tig00111721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2243253

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1102 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2193373--2193441
28
2.5
28
95
2
122
30
10
21
37
1.87
2194086--2194154
29
2.3
30
92
2
113
37
11
30
20
1.88
2194119--2194229
35
3.1
36
85
3
154
30
9
38
20
1.85
2194302--2194374
2
37.5
2
83
5
96
49
0
0
50
1.00
2202060--2202101
2
21.0
2
100
0
84
50
0
0
50
1.00
2202220--2202258
18
2.2
18
86
9
53
53
7
17
20
1.68
2203505--2203537
17
1.9
17
93
0
57
6
15
9
69
1.34
2205791--2205842
21
2.5
21
96
0
95
38
19
17
25
1.93
2212843--2212880
19
2.0
19
89
0
58
47
2
2
47
1.30
2219408--2219448
17
2.6
16
88
7
57
4
12
7
75
1.16
2219985--2220010
3
8.7
3
100
0
52
65
0
0
34
0.93
2222584--2223249
333
2.0
331
85
4
892
26
15
18
39
1.91
2227450--2227487
12
3.3
12
82
14
53
2
10
21
65
1.35
2227450--2227513
22
2.9
22
83
6
76
1
14
20
64
1.37
2227999--2228043
13
3.4
13
84
3
54
51
0
2
46
1.13
2228005--2228036
17
1.9
16
93
6
55
50
0
0
50
1.00
2227999--2228051
14
3.6
15
81
16
58
52
0
1
45
1.11
2228707--2228751
20
2.2
20
96
0
81
31
24
15
28
1.96
2232451--2232493
18
2.4
18
96
0
77
23
18
11
46
1.82
2236264--2236310
12
4.1
12
81
10
62
0
17
25
57
1.40
2236264--2236320
22
2.6
22
85
0
78
1
15
24
57
1.48
2236784--2236832
15
3.1
17
80
19
61
51
0
2
46
1.12

Tables:   1   2   3   4   5   6   7   8   9   10

The End!