genome.fa.s8693.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008693.1 Hibiscus syriacus cultivar Beakdansim tig00111721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2243253

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373931--373970	19	2.0	20	90	4	64	7	15	0	77	0.98
374653--374694	19	2.3	18	84	11	59	7	14	0	78	0.95
383082--383113	12	2.4	14	85	15	50	50	9	0	40	1.35
389333--389503	46	3.8	45	89	3	263	36	7	24	31	1.84
399263--399367	52	2.0	52	92	0	174	29	10	19	40	1.84
406247--406287	21	2.0	21	85	9	57	36	31	0	31	1.58
406417--406466	17	3.1	17	77	16	52	48	6	0	46	1.27
407091--407146	3	18.7	3	100	0	112	32	0	0	67	0.91
408217--408261	2	22.5	2	100	0	90	48	0	0	51	1.00
408733--408778	20	2.2	22	84	7	60	30	2	13	54	1.50
415234--415314	18	4.6	17	83	11	92	82	1	14	1	0.79
415219--415314	35	2.7	35	85	4	113	81	1	13	4	0.89
415234--415297	9	7.1	9	83	13	87	85	1	12	0	0.66
415234--415314	19	4.6	17	80	14	76	82	1	14	1	0.79
415219--415314	25	3.7	25	81	4	93	81	1	13	4	0.89
415250--415297	1	48.0	1	78	0	51	89	0	10	0	0.48
421071--421133	22	2.8	22	85	7	74	22	34	25	17	1.95
424793--424883	37	2.4	36	85	5	110	84	1	10	3	0.79
424824--424883	18	3.5	17	86	8	86	90	0	10	0	0.47
424808--424876	9	7.6	9	87	9	104	86	1	11	0	0.62
424824--424883	1	60.0	1	79	0	66	90	0	10	0	0.47
424793--424883	20	4.4	20	80	18	98	84	1	10	3	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424826--424900	25	2.8	26	82	9	73	84	0	14	1	0.70
427371--427552	67	2.7	66	84	4	224	29	16	12	41	1.85
427564--427837	100	2.7	100	84	5	336	35	16	10	36	1.84
428186--428587	139	2.9	139	83	1	511	34	26	15	24	1.94
428911--428940	3	9.7	3	92	7	51	33	0	0	66	0.92
431326--431351	10	2.6	10	100	0	52	42	11	0	46	1.40
432221--432280	2	30.0	2	100	0	120	50	0	0	50	1.00
436030--436162	61	2.2	60	84	1	176	30	24	5	39	1.77
436292--436401	57	1.9	59	88	3	170	44	4	18	32	1.70
439581--439620	21	1.9	21	89	0	62	30	17	35	17	1.93
444003--444034	16	2.0	16	100	0	64	18	37	12	31	1.88
445275--445343	32	2.2	32	83	0	93	21	26	27	24	1.99
445382--445417	15	2.3	16	95	4	65	30	25	30	13	1.94
445846--445899	22	2.5	22	93	0	90	44	14	5	35	1.69
445864--445911	22	2.2	22	84	0	60	45	10	6	37	1.64
446536--446698	87	1.9	87	80	11	190	33	18	17	30	1.94
448734--448773	22	2.0	20	85	14	55	30	10	30	30	1.90
465670--465713	17	2.6	17	92	0	70	40	11	4	43	1.61
467451--467532	41	2.0	41	100	0	164	34	19	26	19	1.96
469656--469690	18	1.9	18	94	0	61	20	5	2	71	1.19
473748--473798	26	1.9	27	92	4	86	66	7	0	25	1.18
478368--478660	103	2.8	103	85	5	335	28	14	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488452--489686	54	22.8	54	91	0	1685	33	17	25	23	1.96
489043--489133	29	3.3	29	64	22	77	32	15	24	27	1.95
489480--489871	55	7.1	55	90	3	576	31	14	26	28	1.95
492558--492846	100	2.8	101	80	8	275	28	15	22	33	1.95
492556--492887	103	3.3	99	77	11	280	28	15	21	34	1.94
499573--499612	20	2.0	20	90	0	62	32	17	25	25	1.97
499967--500023	18	2.9	19	80	10	71	50	7	12	29	1.66
503116--503188	20	3.9	18	79	15	78	30	16	24	28	1.96
503118--503189	36	2.0	36	91	5	119	30	16	23	29	1.96
503221--503269	20	2.5	20	93	0	80	28	16	28	26	1.97
503915--503962	15	3.3	15	82	11	73	68	10	0	20	1.18
503910--503962	28	1.9	28	96	3	99	67	9	0	22	1.19
503914--503960	13	3.4	14	72	21	53	68	10	0	21	1.20
503904--503969	28	2.4	27	85	14	98	62	12	0	25	1.30
510799--510915	46	2.6	45	87	4	164	22	22	11	44	1.84
510872--511079	26	8.7	26	66	26	104	22	21	12	44	1.84
510826--510987	71	2.3	72	89	3	238	22	20	11	45	1.82
510897--511120	46	4.9	46	89	5	328	21	20	11	45	1.82
517868--518423	46	11.9	46	81	9	467	21	23	10	44	1.83
517899--517991	47	2.2	39	74	25	107	23	24	8	43	1.82
517868--518423	92	6.0	92	79	11	526	21	23	10	44	1.83
517884--518392	72	7.2	70	70	18	276	21	23	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517981--518423	164	2.7	164	81	8	576	21	22	11	45	1.83
518077--518423	118	2.9	118	93	0	568	21	22	10	45	1.82
518845--519023	95	1.9	96	83	5	240	24	22	13	39	1.91
528566--528611	19	2.4	19	92	0	74	21	4	32	41	1.73
529206--529254	22	2.2	22	100	0	98	32	22	18	26	1.97
529986--530125	36	3.9	36	83	3	167	28	17	20	34	1.95
530196--530348	77	2.0	77	85	2	209	25	14	26	33	1.94
530898--530952	20	2.7	21	78	16	53	69	5	1	23	1.19
536567--536828	132	2.0	132	81	4	303	29	14	21	34	1.93
536928--537089	79	2.1	79	86	0	225	26	14	24	33	1.94
541370--541410	16	2.7	15	88	7	64	65	4	7	21	1.37
541375--541409	16	2.2	16	100	0	70	71	5	5	17	1.25
547564--547615	21	2.5	21	87	3	70	36	15	25	23	1.93
547604--547758	20	7.7	20	80	7	134	30	26	18	24	1.98
547601--547678	41	1.9	41	97	0	147	37	24	17	20	1.94
547911--547944	12	2.9	12	86	4	52	17	41	5	35	1.74
548727--548751	12	2.1	12	100	0	50	72	0	28	0	0.86
560638--560681	20	2.2	20	88	4	63	36	20	22	20	1.95
560665--560822	33	4.8	33	96	0	280	46	17	23	12	1.82
560683--560803	14	7.6	14	67	24	53	45	18	23	12	1.83
560834--560946	33	3.4	33	90	0	172	11	23	20	45	1.83
560853--560946	19	5.5	19	63	23	64	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561053--561089	14	2.6	14	91	0	65	45	21	0	32	1.52
562422--562488	21	3.2	21	68	4	55	19	19	35	25	1.95
562965--563030	19	3.7	19	73	19	70	46	22	19	10	1.80
562997--563036	19	2.1	19	85	0	53	52	22	15	10	1.71
563028--563057	12	2.5	12	100	0	60	76	16	6	0	0.99
563129--563383	94	2.7	94	96	0	467	47	19	11	21	1.80
565046--565144	19	5.1	19	83	9	110	46	18	21	14	1.83
565738--565831	20	4.7	20	84	2	125	20	20	19	40	1.92
565738--565831	41	2.3	40	87	1	125	20	20	19	40	1.92
565923--565975	21	2.5	22	75	6	65	35	18	24	20	1.95
566954--566997	16	2.8	16	78	0	61	63	4	0	31	1.14
567140--567837	259	2.7	258	84	3	898	35	15	15	33	1.90
569369--569403	14	2.5	14	95	0	61	40	14	8	37	1.76
572921--572973	3	16.7	3	84	7	52	66	1	0	32	1.03
572922--572973	23	2.3	23	80	9	63	65	1	0	32	1.04
572903--572970	20	3.5	20	76	11	70	67	2	0	29	1.05
577792--577839	19	2.4	20	83	16	64	14	0	2	83	0.74
577785--577838	24	2.2	24	87	6	74	14	1	1	81	0.86
582630--582731	32	3.2	32	85	2	134	32	18	2	46	1.64
583450--583513	24	2.6	25	82	7	78	17	14	3	65	1.39
593111--593167	12	5.1	11	85	8	64	75	0	22	1	0.90
593111--593168	18	3.4	17	84	13	75	75	0	22	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593115--593161	22	2.1	21	85	14	60	74	0	23	2	0.93
593114--593167	5	9.8	5	81	18	63	75	0	22	1	0.89
596214--596528	167	1.9	168	84	5	422	29	18	12	39	1.87
596467--596553	36	2.4	38	79	14	94	35	19	9	35	1.84
596811--596994	83	2.2	83	83	0	215	34	28	14	22	1.93
597034--597427	122	3.2	122	81	5	395	36	21	13	28	1.91
598810--598899	32	2.8	32	89	3	137	27	16	3	52	1.60
601059--601129	36	2.0	35	86	2	97	40	12	16	29	1.86
604102--604131	15	2.0	15	93	0	51	63	0	0	36	0.95
604392--604856	55	8.5	55	85	1	567	26	21	21	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10