genome.fa.s8693.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008693.1 Hibiscus syriacus cultivar Beakdansim tig00111721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2243253

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272231--272319	37	2.4	37	90	1	144	0	12	0	87	0.54
272773--272801	11	2.6	11	100	0	58	0	17	0	82	0.66
278094--278605	261	2.0	256	92	2	846	19	22	15	42	1.88
285416--285554	40	3.4	40	76	13	147	23	15	33	28	1.94
285392--285522	43	3.1	42	74	14	137	21	16	32	30	1.95
285382--285560	83	2.2	83	86	4	254	22	16	33	27	1.95
285580--285744	67	2.5	65	87	2	213	40	16	18	24	1.91
285754--285871	38	3.1	37	82	9	132	38	11	17	31	1.86
286109--286174	24	2.9	22	73	18	62	50	4	9	36	1.55
287807--287837	16	1.9	16	93	0	53	45	25	29	0	1.54
288126--288162	9	4.0	10	93	6	53	64	0	0	35	0.94
288133--288162	3	9.7	3	92	7	51	66	0	0	33	0.92
289452--289493	21	2.0	21	100	0	84	33	23	19	23	1.97
290735--290778	10	4.4	10	85	0	61	34	34	2	29	1.70
290735--290778	20	2.2	20	91	0	70	34	34	2	29	1.70
290810--290838	5	5.8	5	100	0	58	37	0	0	62	0.96
290809--290905	20	4.9	20	72	21	73	30	1	4	63	1.19
290834--290903	36	1.9	36	94	2	122	30	1	4	64	1.21
295526--295564	20	1.9	20	85	15	53	33	0	30	35	1.58
296378--296440	21	3.0	21	90	4	99	23	26	23	25	2.00
296382--296440	22	2.8	21	89	5	91	23	27	25	23	2.00
302832--302890	22	2.8	21	74	5	64	25	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308423--308461	20	1.9	20	85	15	53	33	0	28	38	1.57
313698--313799	37	2.8	37	83	0	123	31	13	12	42	1.82
314345--314974	105	6.0	105	89	3	862	22	18	25	33	1.97
315174--315249	36	2.1	36	90	0	116	40	15	21	22	1.90
315370--315444	39	1.9	39	83	5	98	37	13	22	26	1.91
315149--315464	105	3.1	104	93	2	521	36	12	20	30	1.89
315552--315712	72	2.2	74	84	7	204	39	12	19	28	1.88
316859--317385	183	2.9	183	95	0	948	30	20	21	27	1.98
322046--322119	37	2.0	36	82	7	87	66	1	9	22	1.29
322076--322113	20	1.9	20	88	0	58	63	2	7	26	1.35
322507--322550	21	2.0	22	82	4	54	2	18	22	56	1.52
322603--322707	37	2.8	37	77	5	113	28	14	14	42	1.84
325690--325749	22	2.9	21	90	7	95	26	23	23	26	2.00
328590--328634	21	2.1	21	95	0	81	28	26	20	24	1.99
328595--328660	21	3.2	21	81	12	66	25	22	19	31	1.98
328649--328939	21	14.0	21	70	15	185	22	19	23	35	1.96
328674--328939	42	6.4	42	91	0	428	22	18	22	35	1.95
329029--329053	6	4.2	6	100	0	50	36	48	16	0	1.46
329687--329725	6	6.5	6	96	0	69	0	15	53	30	1.42
329823--329895	35	2.1	35	97	0	137	35	24	20	19	1.95
329858--329955	21	4.8	19	83	12	115	32	24	21	21	1.98
329858--329956	40	2.4	41	88	3	146	33	24	21	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329815--329963	40	3.8	40	74	8	119	35	22	20	21	1.96
330463--330850	138	2.8	138	85	3	388	26	13	14	45	1.82
330515--330850	139	2.4	139	88	2	489	24	13	14	46	1.82
330515--330904	138	2.8	138	84	3	498	24	13	14	47	1.81
333003--333032	13	2.2	14	94	5	53	40	0	0	60	0.97
334785--334866	15	5.5	15	86	2	112	39	7	18	35	1.78
334779--334866	45	2.0	44	90	2	140	40	6	19	32	1.78
334785--334866	30	2.8	30	92	1	130	39	7	18	35	1.78
335032--335095	19	3.3	19	70	23	53	46	3	0	50	1.17
335091--335161	33	2.3	32	81	11	85	43	0	5	50	1.25
335248--335327	31	2.6	31	83	14	105	53	1	0	45	1.08
335249--335340	30	3.1	28	76	18	82	50	2	1	46	1.20
335642--335758	31	3.8	31	74	18	86	48	0	0	49	1.12
335650--335693	22	2.0	23	86	4	63	45	0	0	54	0.99
335763--335815	20	2.7	19	73	18	54	49	0	1	49	1.12
335810--335854	23	2.0	23	86	0	63	53	2	2	42	1.25
336176--336214	20	2.0	20	84	0	51	33	17	7	41	1.79
336188--336245	15	3.9	15	86	4	91	29	20	6	43	1.78
336279--336348	31	2.2	33	80	16	87	51	0	1	47	1.09
336298--336341	22	2.0	23	86	4	63	54	0	0	45	0.99
337522--337576	13	4.2	13	80	13	67	50	10	3	34	1.55
337562--337660	33	3.0	33	94	1	164	45	15	7	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337655--337694	21	1.9	21	94	0	71	47	7	15	30	1.72
339990--340035	12	3.6	12	81	16	56	17	19	17	45	1.85
339989--340028	15	2.9	14	85	14	57	20	17	15	47	1.83
341611--341671	29	2.1	29	93	3	106	36	16	16	31	1.91
343819--343859	18	2.2	19	95	4	75	34	24	12	29	1.91
349870--350002	20	6.5	20	71	14	74	36	21	19	21	1.95
349994--350164	20	8.4	20	82	4	209	36	25	18	19	1.94
349994--350184	40	4.7	41	88	1	278	38	25	17	18	1.93
349994--350184	20	9.4	20	74	13	122	38	25	17	18	1.93
350744--350822	20	3.9	21	86	5	94	51	17	18	11	1.75
350804--350868	14	4.3	14	73	17	58	46	21	23	9	1.80
350799--350879	33	2.5	33	93	0	135	46	22	20	9	1.80
350875--351037	20	8.6	19	79	11	129	14	23	20	41	1.90
350942--351037	40	2.4	40	100	0	192	16	25	19	38	1.92
352736--353115	94	4.1	94	96	1	665	21	12	18	46	1.82
353218--353275	14	3.8	14	79	20	71	44	20	25	8	1.80
353170--353330	19	9.1	19	78	16	87	49	21	19	9	1.77
353203--353294	33	2.8	33	90	3	143	45	22	22	8	1.80
353266--353347	38	2.2	38	93	0	137	48	25	15	9	1.76
353266--353338	19	3.8	19	98	0	137	50	26	16	6	1.70
353382--353465	20	4.2	20	95	0	141	20	20	21	38	1.94
353954--353995	21	2.2	19	87	12	59	21	35	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353979--354070	42	2.2	42	82	3	105	25	35	17	21	1.95
355551--355648	33	2.9	33	87	1	142	41	19	24	14	1.88
355588--355643	19	3.2	19	71	23	68	44	17	23	14	1.85
355595--355650	19	3.2	19	66	23	59	48	16	23	12	1.80
355662--355755	33	2.8	34	90	3	145	13	22	20	43	1.87
355799--355886	19	4.8	19	76	16	96	15	21	15	46	1.83
355799--355919	52	2.3	53	85	2	154	14	23	17	44	1.86
355891--355944	20	2.7	20	88	5	74	18	22	22	37	1.95
356244--356480	20	11.7	20	77	8	230	19	18	24	37	1.94
356246--356518	40	6.7	41	85	5	333	19	17	24	38	1.93
356246--356518	81	3.4	82	85	5	333	19	17	24	38	1.93
356466--356518	20	2.7	20	91	5	81	13	18	24	43	1.86
356486--356579	42	2.3	42	76	9	95	21	21	22	35	1.96
356568--356621	20	2.7	19	75	8	63	16	18	31	33	1.93
356933--357119	59	3.2	60	86	3	261	32	22	5	39	1.78
358177--358260	32	2.7	32	82	14	113	29	33	25	11	1.91
358406--358461	12	4.7	12	84	0	76	53	16	17	12	1.73
358406--358461	24	2.3	24	90	0	94	53	16	17	12	1.73
359249--359287	19	2.1	19	85	0	51	30	33	15	20	1.94
359304--359416	20	5.5	21	85	3	106	48	14	17	19	1.81
359316--359436	20	5.9	20	86	3	136	47	14	18	19	1.82
359786--359855	20	3.4	20	84	4	95	21	17	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359849--359915	20	3.3	20	82	0	89	17	14	25	41	1.88
359843--359984	40	3.5	41	74	12	123	23	16	23	37	1.93
363098--363173	32	2.4	31	87	8	109	35	31	19	13	1.90
363317--363410	12	7.8	12	78	4	91	52	14	17	15	1.76
363317--363410	24	3.9	24	87	0	125	52	14	17	15	1.76
366006--366035	14	2.1	14	93	0	51	40	3	0	56	1.16
366207--366277	27	2.8	26	76	18	69	45	1	1	52	1.18
370925--371110	45	4.1	45	90	0	282	19	19	13	46	1.84
370978--371052	24	3.2	24	63	24	61	20	21	13	45	1.84
373936--373963	12	2.3	12	100	0	56	7	14	0	78	0.95

Tables:   1   2   3   4   5   6   7   8   9   10