genome.fa.s8721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008721.1 Hibiscus syriacus cultivar Beakdansim tig00111779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2464137

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  1  of  12  ( 1342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1176--1237	21	3.0	21	92	2	99	24	27	22	25	2.00
1362--1421	18	3.4	18	70	25	56	20	25	35	20	1.96
1347--1424	32	2.3	35	89	6	117	19	24	34	21	1.96
1347--1428	35	2.4	34	86	7	123	18	26	32	21	1.97
1707--1765	28	2.1	28	100	0	118	42	3	13	40	1.61
2820--2865	20	2.3	20	96	0	83	30	13	4	52	1.59
4262--4303	21	2.0	21	90	0	66	26	28	23	21	1.99
4430--4488	15	3.4	17	68	27	52	16	28	35	18	1.93
4418--4501	34	2.4	34	92	2	132	19	26	33	21	1.97
5117--5165	20	2.5	20	96	0	89	34	16	20	28	1.94
7508--7550	2	21.5	2	100	0	86	51	0	0	48	1.00
18929--19084	23	6.8	23	94	0	276	25	22	25	26	2.00
20334--20405	27	2.7	27	84	0	90	47	4	6	41	1.50
20388--20679	7	43.7	7	70	20	105	43	3	8	45	1.50
20388--20679	13	21.9	14	69	19	105	43	3	8	45	1.50
20361--20562	41	5.2	40	77	17	187	42	3	8	45	1.52
20498--21113	2	296.5	2	66	21	130	44	4	6	44	1.50
20498--20631	9	15.4	9	72	22	74	44	2	6	46	1.42
20463--20624	22	7.3	22	69	16	59	43	3	7	46	1.47
20436--20927	27	16.8	29	68	19	81	43	3	8	44	1.52
20500--20678	92	1.9	94	87	11	269	45	3	6	45	1.45
20388--20664	20	14.2	20	70	21	128	42	3	8	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20580--20679	27	3.9	27	68	24	90	46	4	7	43	1.49
20749--20821	27	2.7	27	86	0	101	47	4	5	42	1.45
20841--20887	11	4.5	11	73	10	53	38	2	8	51	1.45
20996--21112	13	8.5	13	68	21	60	46	2	4	47	1.36
20958--21116	44	3.6	44	79	14	161	45	3	5	46	1.41
22218--22316	47	2.1	47	98	0	189	41	12	11	35	1.78
24802--24990	65	2.9	65	90	1	301	22	13	21	42	1.88
28727--28783	21	2.6	22	77	5	71	21	26	19	33	1.97
28768--28886	20	5.9	20	77	8	116	32	20	21	25	1.97
28768--28863	40	2.4	40	94	0	165	35	19	21	22	1.96
29700--29753	24	2.2	24	90	0	81	22	18	18	40	1.91
29943--29978	14	2.5	14	90	4	54	50	22	22	5	1.70
32964--33079	3	38.7	3	92	0	196	62	0	2	34	1.09
33398--34074	113	6.0	113	97	0	1212	28	19	14	37	1.91
35970--36030	9	6.0	10	74	22	56	3	16	0	80	0.84
35971--36031	6	10.3	6	75	15	56	3	14	0	81	0.80
35986--36041	16	3.6	16	79	13	62	5	12	0	82	0.83
35971--36040	20	3.3	21	81	16	83	4	14	0	81	0.84
35971--36040	15	4.4	16	80	18	76	4	14	0	81	0.84
46632--46668	15	2.7	15	88	12	53	62	8	5	24	1.44
48828--48922	3	31.7	3	95	0	172	64	0	2	33	1.06
50015--50049	18	1.9	18	94	0	61	54	25	2	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50227--50521	20	15.7	20	75	12	250	36	22	20	21	1.95
50232--50504	54	5.0	54	82	5	332	36	22	20	20	1.95
50380--50530	73	2.1	74	93	1	259	35	23	20	21	1.96
50286--50526	94	2.6	93	84	3	279	37	22	19	20	1.95
50656--50735	30	2.4	34	78	20	105	56	13	3	26	1.54
50671--50736	30	2.2	30	97	0	123	56	12	3	28	1.51
52181--52239	21	2.8	21	100	0	118	23	20	35	20	1.96
52815--52856	20	2.2	19	86	4	57	14	19	19	47	1.82
52820--52865	20	2.3	20	88	0	65	15	26	21	36	1.93
53015--53064	18	2.8	18	100	0	100	42	6	20	32	1.76
54751--54807	20	2.8	20	89	0	78	50	21	15	12	1.76
55203--55256	22	2.5	22	84	0	81	16	18	42	22	1.89
55421--55598	20	8.9	20	83	4	198	28	20	19	30	1.97
56828--56884	22	2.6	22	74	0	60	66	1	0	31	1.02
60666--60796	67	1.9	68	96	1	246	22	19	10	47	1.80
61541--61613	21	3.5	20	88	5	101	39	16	23	20	1.92
61633--61716	21	4.0	21	81	9	100	21	19	17	41	1.90
61706--61799	20	4.7	20	77	2	98	41	15	20	22	1.90
61706--61799	41	2.3	41	85	1	118	41	15	20	22	1.90
62419--62521	52	2.0	53	94	1	181	11	24	23	40	1.87
62405--62550	19	8.1	19	71	17	105	14	23	19	43	1.87
64235--64610	94	4.1	93	94	2	616	21	12	18	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64697--64737	19	2.2	19	86	0	55	12	17	21	48	1.79
65154--65272	42	2.8	42	81	5	107	22	36	17	23	1.95
65212--65272	21	3.0	20	69	7	50	22	37	18	21	1.94
66614--66649	14	2.6	14	95	0	63	33	0	22	44	1.53
66756--66849	33	2.8	33	88	3	136	46	22	19	11	1.81
66756--66816	19	3.5	19	74	21	69	44	21	22	11	1.84
66788--66864	19	4.3	19	75	18	67	46	24	15	12	1.81
66860--66977	19	6.7	19	66	19	76	12	24	19	43	1.86
66864--66957	33	2.8	33	93	0	161	12	24	18	44	1.84
66930--66984	20	2.8	19	83	2	65	18	21	21	38	1.94
66951--67023	20	3.6	20	67	17	60	23	19	23	34	1.97
69286--69310	12	2.1	12	100	0	50	0	28	0	72	0.86
69485--69538	24	2.2	24	90	0	81	40	20	16	22	1.91
70259--70434	41	4.3	41	73	4	140	26	18	24	30	1.98
70287--70386	20	4.9	20	83	7	112	23	19	27	31	1.98
83823--83868	18	2.7	17	93	6	76	32	6	32	28	1.83
84456--84539	38	2.2	38	87	6	127	38	36	11	13	1.81
84507--85053	255	2.1	252	88	6	789	42	20	10	26	1.85
90377--90449	23	3.2	23	92	0	110	38	21	4	35	1.73
90386--90450	23	2.8	23	95	0	112	35	23	3	38	1.70
90867--90939	23	3.2	23	92	0	119	38	21	5	34	1.77
89978--91098	490	2.3	489	96	1	2077	39	11	7	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91099--91612	183	2.8	183	93	1	845	33	15	13	37	1.88
93966--94031	33	2.0	33	90	0	105	22	48	0	28	1.51
94065--94129	21	3.1	21	93	0	103	16	30	10	41	1.83
96154--96206	24	2.2	24	83	6	63	26	7	13	52	1.66
96351--96406	20	2.8	19	76	7	58	21	14	8	55	1.66
96532--96578	20	2.3	20	89	10	78	17	19	8	55	1.67
96318--96790	181	2.6	182	89	1	700	27	16	13	42	1.86
98361--98409	21	2.3	21	100	0	98	53	32	14	0	1.41
103986--104301	103	3.1	103	96	0	569	26	13	23	36	1.92
104318--104385	23	3.0	23	88	0	91	20	26	26	26	1.99
104414--104447	17	2.1	17	88	5	52	32	23	5	38	1.79
109261--109576	103	3.1	103	96	0	571	26	13	23	36	1.92
109593--109660	23	3.0	23	86	0	91	20	25	26	27	1.99
112871--112919	22	2.2	22	82	7	64	32	30	28	8	1.86
114534--114849	103	3.1	103	96	0	571	26	13	23	36	1.92
114866--114933	23	3.0	23	86	0	91	20	25	26	27	1.99
118147--118195	22	2.2	22	82	7	64	32	30	28	8	1.86
119809--120124	103	3.1	103	95	0	569	26	13	23	36	1.92
120141--120208	23	3.0	23	86	0	82	20	25	26	27	1.99
124367--124668	55	5.6	55	80	11	306	29	24	15	30	1.95
124367--124665	111	2.8	106	79	12	299	29	24	15	30	1.95
126035--126544	7	72.7	7	97	2	954	13	14	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126016--126077	9	7.3	9	85	10	62	8	14	0	77	0.98
126575--126612	10	3.9	10	86	3	51	10	13	0	76	1.02
126518--126590	12	6.2	12	74	13	64	5	15	0	79	0.90
144951--145010	23	2.6	23	97	0	111	23	31	26	18	1.97
145622--145772	67	2.3	66	90	2	230	15	25	28	30	1.96
147769--147874	45	2.3	47	90	6	162	39	20	9	30	1.84
153988--154311	155	2.1	155	97	1	596	38	17	13	29	1.89
154839--154883	23	2.0	23	90	0	72	24	26	26	22	2.00
154851--155165	149	2.1	149	96	1	578	35	20	16	28	1.94
156558--156723	64	2.6	63	84	7	208	27	21	18	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12