genome.fa.s8721.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008721.1 Hibiscus syriacus cultivar Beakdansim tig00111779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2464137

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589717--589789	34	2.1	34	92	0	119	36	9	4	49	1.55
589461--589871	204	2.0	205	99	0	806	41	10	5	42	1.63
596653--597158	128	4.0	128	97	0	951	20	24	20	33	1.97
597561--597661	34	3.0	34	83	0	130	39	1	2	55	1.26
598184--598358	21	8.4	20	88	6	233	21	24	34	18	1.96
598181--598358	42	4.2	42	94	1	304	22	24	34	18	1.96
598181--598358	63	2.8	62	87	8	261	22	24	34	18	1.96
600141--600220	34	2.4	33	81	8	92	60	1	0	38	1.05
608576--608613	20	1.9	20	94	0	67	34	13	10	42	1.78
621253--621316	6	10.7	6	89	0	83	6	17	45	31	1.73
621593--621647	22	2.5	22	75	0	56	29	9	23	38	1.85
630760--630797	20	1.9	20	89	10	60	26	5	0	68	1.11
630755--630813	25	2.4	27	75	16	65	32	5	0	62	1.17
630960--631032	17	3.9	18	72	24	53	17	1	5	75	1.07
631196--631241	10	4.6	10	79	15	51	8	6	2	82	0.91
631268--631311	20	2.3	19	84	4	52	18	0	6	75	1.02
636642--636702	23	2.7	23	81	0	86	21	26	26	26	1.99
647037--647090	23	2.4	23	87	9	76	16	29	24	29	1.97
651813--651997	93	2.0	93	91	0	298	33	18	16	31	1.93
653582--653653	31	2.5	28	76	10	72	34	16	15	33	1.90
655757--656165	83	4.8	84	81	4	441	33	22	18	25	1.96
655760--656178	168	2.5	170	82	5	553	34	21	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657796--657830	6	5.8	6	86	0	52	17	2	0	80	0.84
657906--657992	26	3.4	25	71	16	70	16	4	4	74	1.15
657850--657994	9	16.9	8	70	18	53	13	6	3	75	1.13
657957--658035	41	1.9	41	82	5	97	18	5	5	70	1.24
658657--658692	2	18.0	2	100	0	72	50	0	0	50	1.00
664106--664232	51	2.5	51	97	0	236	46	15	10	27	1.78
667634--667673	20	2.0	20	90	4	64	52	7	20	20	1.70
674254--674296	18	2.5	17	75	10	52	51	0	2	46	1.13
674964--674995	15	2.1	15	94	0	55	65	0	9	25	1.22
675794--675951	21	7.8	20	72	7	86	38	25	17	18	1.92
675918--676167	20	12.5	20	84	3	261	37	24	18	19	1.94
676847--676892	24	2.0	23	87	12	67	26	15	21	36	1.93
677063--677087	12	2.1	12	100	0	50	72	0	28	0	0.86
679384--679499	52	2.2	52	96	3	216	13	24	18	43	1.86
679403--679499	19	5.3	19	84	13	141	14	22	17	45	1.85
679576--679629	14	3.6	14	77	18	63	44	20	24	11	1.83
679558--679648	32	2.8	33	94	5	166	43	18	24	13	1.85
679590--679699	52	2.1	51	94	1	193	45	18	20	15	1.85
679712--679810	19	5.5	19	84	12	138	15	23	17	44	1.86
679695--679810	51	2.2	53	92	3	191	14	24	17	43	1.86
681917--681973	14	3.7	14	77	20	60	45	22	21	10	1.82
681898--681990	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681861--681995	19	7.6	19	76	16	128	45	23	19	11	1.82
681991--682119	19	7.3	19	75	17	125	8	17	28	45	1.77
681991--682082	33	2.8	33	93	3	150	7	18	28	45	1.76
682163--682633	92	5.1	93	97	0	894	45	18	12	22	1.84
684329--684418	14	5.7	14	74	23	81	41	24	25	8	1.84
684321--684435	33	3.5	33	95	0	203	44	21	24	9	1.82
684328--684440	19	6.8	18	72	23	88	42	23	24	9	1.84
684452--684508	14	3.7	14	75	20	60	8	24	22	43	1.81
684436--684516	33	2.5	33	93	0	135	8	22	23	45	1.79
684493--684568	21	3.7	21	85	3	109	11	25	18	44	1.83
684492--684569	41	1.9	41	94	0	138	12	25	17	43	1.85
684648--684720	33	2.2	33	87	2	103	47	17	21	12	1.80
684899--684951	22	2.4	22	83	0	79	20	13	39	26	1.89
685076--685157	40	2.1	40	81	6	96	23	15	23	37	1.93
685099--685291	20	9.6	20	83	3	219	19	20	25	35	1.96
685098--685413	60	5.2	60	78	9	200	19	18	25	36	1.95
685278--685360	21	4.0	21	73	6	78	25	16	22	34	1.95
685258--685356	42	2.4	43	77	11	100	21	18	22	38	1.93
690991--691043	27	2.0	27	92	0	88	16	15	41	26	1.88
691829--691992	81	2.0	81	96	0	301	27	16	35	20	1.94
692218--692273	27	2.1	27	100	0	112	25	21	25	28	1.99
692346--692454	29	3.8	29	95	2	175	22	32	30	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697720--697745	11	2.4	11	100	0	52	26	34	0	38	1.57
700361--700474	35	3.2	35	92	4	185	47	18	4	29	1.68
701164--701188	9	2.8	9	100	0	50	20	36	0	44	1.52
703774--703907	61	2.3	57	87	7	182	58	17	12	11	1.63
704359--704398	21	1.9	21	89	0	62	52	5	5	37	1.45
704829--704866	15	2.5	15	86	0	58	15	44	23	15	1.85
707675--707728	11	4.7	12	83	4	67	33	24	7	35	1.83
709450--709491	15	2.8	15	89	7	59	52	0	2	45	1.13
709516--709576	11	5.7	11	72	14	56	39	1	1	57	1.18
709548--709595	25	1.9	25	86	0	69	43	0	4	52	1.20
709616--709664	20	2.5	20	96	0	89	16	22	22	38	1.92
710841--710873	15	2.1	17	88	11	52	27	6	3	63	1.32
713151--713221	29	2.4	29	97	0	133	36	5	7	50	1.53
714386--714470	21	4.1	21	81	3	102	17	18	20	43	1.88
722667--722747	31	2.8	28	78	14	76	41	3	0	54	1.18
722707--722760	23	2.3	23	84	6	65	40	3	1	53	1.29
722712--722769	23	2.6	22	81	10	64	43	1	1	53	1.21
722861--722919	29	2.0	29	90	0	91	54	0	8	37	1.31
723027--723106	29	2.7	29	80	3	79	62	2	5	30	1.29
724368--724397	6	4.8	6	95	4	51	33	0	0	66	0.92
726039--726063	2	12.5	2	100	0	50	48	0	0	52	1.00
736166--736195	13	2.2	14	94	5	53	13	6	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756224--756270	16	3.1	15	79	8	51	23	0	6	70	1.10
759878--759917	3	13.3	3	89	0	62	2	32	30	35	1.71
761465--761624	65	2.5	65	94	1	277	28	17	22	31	1.97
768129--768168	21	1.9	21	85	10	55	35	10	2	52	1.48
770099--770258	65	2.5	64	89	1	239	30	16	22	31	1.96
770099--770306	65	3.2	63	81	7	222	29	16	22	31	1.96
772334--772371	17	2.3	17	90	4	60	57	5	0	36	1.21
772349--772394	24	1.9	24	86	8	67	65	4	0	30	1.12
790684--790826	71	2.0	72	83	4	182	37	16	19	25	1.93
793483--793530	18	2.7	17	78	15	53	37	22	20	18	1.94
795092--795229	68	2.0	68	100	0	276	34	32	14	18	1.91
796159--796191	12	2.7	13	86	13	52	0	30	0	69	0.88
796162--796192	14	2.1	14	94	5	53	0	32	0	67	0.91
797722--797819	49	2.0	47	90	3	151	25	28	8	37	1.84
799757--799797	21	2.0	21	90	0	64	41	9	0	48	1.36
800303--800394	21	4.4	21	97	0	157	19	42	20	17	1.89
802973--803011	21	1.9	21	89	5	62	33	7	10	48	1.66
803234--803331	20	4.8	20	82	6	97	24	33	19	22	1.97
805048--805110	28	2.2	28	83	8	83	34	30	17	17	1.93
812555--812603	19	2.7	17	84	9	53	26	20	28	24	1.99
813688--813740	24	2.2	24	93	0	88	35	0	35	28	1.58
814907--814970	20	3.1	20	78	8	56	54	3	3	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
820716--820746	2	15.5	2	100	0	62	51	0	0	48	1.00
823369--823406	2	20.0	2	89	10	62	47	0	0	52	1.00
824453--824479	14	1.9	14	100	0	54	44	7	0	48	1.31
827968--828053	23	3.7	23	73	1	64	47	9	9	33	1.68
828393--828423	2	15.5	2	100	0	62	48	0	0	51	1.00
828420--828485	23	2.9	23	74	0	69	43	7	12	36	1.70
828708--829086	180	2.1	178	89	5	577	40	3	8	46	1.52
833653--833731	4	19.8	4	76	5	79	44	27	6	21	1.76
833653--833743	24	3.8	24	85	2	94	42	28	7	20	1.80
833670--834250	16	35.6	16	90	4	442	33	34	16	15	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12