Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008721.1 Hibiscus syriacus cultivar Beakdansim tig00111779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2464137

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2408140--2408195
12
4.4
12
74
12
58
33
8
35
21
1.85
2408123--2408198
24
3.2
24
76
0
71
36
7
34
21
1.82
2408166--2408198
15
2.2
15
94
0
57
36
6
33
24
1.80
2408128--2408192
30
2.2
30
85
0
85
35
9
35
20
1.84
2409702--2409768
23
2.9
23
88
0
107
32
5
20
40
1.77
2409702--2409793
46
2.0
45
81
8
105
32
7
17
42
1.77
2410184--2410256
23
3.2
23
88
0
110
34
5
20
39
1.76
2410184--2410281
46
2.1
45
81
7
108
33
7
18
40
1.78
2411309--2411377
21
3.2
21
66
22
52
39
2
15
42
1.63
2419621--2419695
31
2.4
31
81
2
96
44
2
4
49
1.35
2420851--2420892
15
2.8
15
85
0
57
4
40
19
35
1.72
2421251--2421347
28
3.5
27
76
9
97
31
7
7
53
1.56
2421327--2421358
16
1.9
17
93
6
57
25
0
0
75
0.81
2422784--2422838
23
2.5
22
80
11
58
29
7
3
60
1.41
2429267--2429381
60
1.9
60
83
3
151
27
24
6
41
1.78
2429509--2429635
60
2.1
60
82
8
152
37
5
22
35
1.77
2429537--2429683
60
2.5
59
79
8
154
42
6
19
32
1.75
2431004--2431040
2
19.0
2
94
5
67
48
0
0
51
1.00
2431026--2431070
24
1.9
23
82
13
56
37
8
0
53
1.32
2461290--2461321
17
1.9
17
93
6
57
43
3
0
53
1.16
2462518--2462549
15
2.1
15
94
0
55
6
37
0
56
1.25
2462538--2462600
28
2.3
26
79
15
72
12
28
4
53
1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!