genome.fa.s8721.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008721.1 Hibiscus syriacus cultivar Beakdansim tig00111779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2464137

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833686--834250	32	17.3	32	88	4	689	33	35	16	15	1.90
833686--834250	48	11.5	48	89	3	689	33	35	16	15	1.90
834348--834382	8	4.4	8	96	0	61	40	25	8	25	1.84
834218--834476	125	2.0	128	95	3	470	30	22	9	37	1.86
836600--836634	18	1.9	18	94	0	61	42	2	0	54	1.15
836604--836664	17	3.6	17	73	4	52	45	3	1	49	1.28
837383--837443	22	2.7	23	77	10	72	50	0	1	47	1.10
838459--838492	17	1.9	18	94	5	61	50	0	2	47	1.16
839021--839053	3	11.3	3	87	6	50	66	0	3	30	1.06
839456--839587	25	5.4	25	81	3	160	38	21	18	21	1.93
839456--839587	49	2.7	50	84	3	178	38	21	18	21	1.93
840788--840863	30	2.5	30	81	8	82	35	13	3	47	1.61
842150--842212	3	21.3	3	78	12	60	30	0	0	69	0.88
843412--843443	6	5.3	6	100	0	64	50	0	0	50	1.00
848465--848492	14	2.0	14	100	0	56	50	14	7	28	1.69
851179--851502	110	3.0	109	90	2	492	35	21	16	25	1.94
851748--852230	124	3.9	122	70	12	354	32	23	17	25	1.97
852012--852252	124	1.9	124	89	1	376	32	24	17	26	1.96
852310--852438	36	3.6	34	80	11	132	26	20	13	39	1.90
852335--852450	36	3.2	36	91	1	187	28	19	13	37	1.90
852367--852429	21	3.3	20	66	25	55	26	19	11	42	1.84
852469--852661	36	5.3	36	89	1	287	25	20	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852468--852661	73	2.7	72	89	1	289	25	20	14	39	1.90
852700--852864	84	2.0	85	87	1	242	30	27	20	22	1.98
852703--852892	84	2.2	84	82	2	211	30	25	20	23	1.98
853111--853157	3	16.7	3	79	20	57	31	0	0	68	0.90
853111--853166	24	2.3	23	82	8	67	30	0	0	69	0.89
853111--853157	10	4.2	11	82	15	60	31	0	0	68	0.90
853108--853165	8	7.2	8	76	19	59	29	0	0	70	0.87
855684--855758	23	3.2	22	72	10	69	30	22	24	22	1.99
855696--855758	24	2.7	23	78	7	74	33	22	25	19	1.97
855655--855758	47	2.2	47	86	10	142	30	25	22	22	1.99
857161--857216	28	2.0	28	85	3	76	42	14	0	42	1.45
859428--859466	15	2.6	15	91	0	60	20	12	28	38	1.89
859506--859550	23	2.0	23	95	0	81	22	17	20	40	1.92
862176--862215	2	20.0	2	94	0	71	0	50	2	47	1.14
862719--862772	26	2.0	27	85	3	74	48	1	5	44	1.37
864128--864563	181	2.4	178	88	3	635	27	15	13	43	1.83
864447--864892	110	4.1	109	88	6	617	25	15	14	44	1.84
864447--864892	216	2.1	217	88	5	674	25	15	14	44	1.84
866530--866573	19	2.3	19	96	0	79	27	20	31	20	1.97
866559--866724	91	1.8	91	84	7	230	28	15	24	30	1.96
866771--867151	189	2.0	191	98	1	748	41	7	9	40	1.66
868980--869036	21	2.7	21	69	0	51	31	22	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
869256--869320	33	2.0	33	93	0	112	29	15	12	43	1.83
869625--869659	14	2.5	14	90	0	52	40	14	5	40	1.69
870221--870258	17	2.2	18	90	4	60	23	31	31	13	1.93
871635--871687	21	2.5	21	90	0	88	37	32	11	18	1.87
877454--877505	25	2.1	25	89	7	79	40	15	15	28	1.88
877919--878010	48	1.9	48	84	0	121	50	16	14	19	1.79
877919--877986	24	2.8	24	86	0	91	52	16	13	17	1.74
877936--877990	12	4.6	12	75	8	58	47	18	16	18	1.83
877920--878027	24	4.5	24	75	4	85	48	16	15	19	1.82
881813--881856	23	1.9	23	85	0	61	54	13	20	11	1.69
884206--884236	3	10.3	3	92	0	53	61	3	35	0	1.12
886034--886089	23	2.5	24	80	11	64	30	3	3	62	1.29
896654--896712	31	1.9	31	85	0	82	42	8	3	45	1.51
901966--902000	18	1.9	18	88	0	52	54	0	17	28	1.43
906700--906745	21	2.3	20	85	7	67	26	23	21	28	1.99
906708--906750	21	2.0	21	90	0	68	23	25	25	25	2.00
906833--906900	6	11.7	6	96	1	104	27	54	17	0	1.43
907670--907820	21	7.3	21	69	18	111	37	21	18	21	1.94
907666--907820	42	3.7	42	94	1	269	37	21	18	21	1.94
907816--907865	21	2.4	21	93	0	82	16	20	32	32	1.94
908961--909204	130	1.9	130	92	0	416	35	13	13	37	1.84
909662--909695	16	2.0	18	88	11	54	64	5	2	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909818--909860	21	2.0	21	100	0	86	39	0	13	46	1.44
909829--909914	35	2.5	35	84	0	100	37	1	20	40	1.61
910466--910577	35	3.2	34	86	7	154	41	23	0	33	1.60
911600--911711	35	3.2	34	85	2	143	35	0	21	41	1.59
913857--913907	20	2.6	20	87	3	68	37	11	17	33	1.86
913929--913976	20	2.4	20	96	0	87	25	22	29	22	1.99
916908--916977	34	2.1	34	97	0	131	31	18	5	44	1.73
918161--918207	12	3.9	12	82	0	67	51	17	19	12	1.77
919419--919459	21	2.0	21	85	9	57	24	0	2	73	0.96
919727--919760	17	2.0	17	88	11	52	29	2	0	67	1.05
919768--919810	17	2.7	17	82	13	56	16	11	0	72	1.13
919860--919905	3	15.3	3	95	0	83	34	0	0	65	0.93
919900--919986	45	1.9	45	83	4	113	16	12	2	68	1.30
919901--919987	9	9.8	9	67	12	54	14	12	2	70	1.27
919934--919978	19	2.2	20	84	11	56	15	15	2	66	1.35
921643--921711	23	3.0	23	84	2	93	7	11	18	62	1.51
921642--921687	13	3.8	12	81	18	51	6	10	21	60	1.52
921643--921683	10	3.8	10	82	17	55	7	9	21	60	1.52
924277--924530	95	2.6	95	81	8	284	35	15	16	32	1.91
925713--925777	21	3.4	21	68	24	70	24	21	12	41	1.87
925683--926014	36	9.2	36	78	12	333	27	19	12	40	1.88
925929--925993	21	3.4	21	68	24	70	24	21	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925821--926078	78	3.6	72	80	12	237	27	20	12	39	1.89
925954--926146	66	2.9	65	80	10	221	27	23	13	34	1.93
926607--926720	41	2.7	43	79	6	135	35	26	14	23	1.94
928834--928863	3	10.0	3	92	0	51	30	0	3	66	1.07
929135--929167	17	2.0	16	94	5	57	30	0	0	69	0.88
929134--929190	17	3.2	16	75	22	51	22	7	0	70	1.11
929262--929306	3	14.7	3	95	4	81	33	0	0	66	0.92
929302--929408	45	2.4	43	80	11	119	15	13	0	70	1.23
933192--933250	12	4.9	12	78	0	64	52	18	16	11	1.74
933192--933250	24	2.5	24	85	0	82	52	18	16	11	1.74
934568--934595	14	2.0	14	100	0	56	21	14	42	21	1.88
935505--935534	2	15.5	2	93	6	53	50	0	0	50	1.00
936922--936961	14	2.8	15	78	21	50	40	0	0	60	0.97
943017--943174	21	7.8	20	72	7	86	38	24	17	18	1.93
943142--943371	20	11.4	20	80	6	232	37	26	16	19	1.93
944061--944107	24	2.0	24	87	8	69	25	14	21	38	1.92
946576--946740	33	4.7	34	81	13	183	46	18	21	13	1.83
946590--946778	19	10.7	19	78	17	219	45	17	21	15	1.85
946576--946778	52	3.9	52	86	10	281	45	18	21	14	1.85
946768--946883	53	2.2	51	92	3	196	13	24	18	43	1.86
946787--946883	18	5.4	19	78	15	116	14	22	17	45	1.85
946990--947026	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948949--949102	19	8.6	19	75	14	139	45	22	20	11	1.82
949024--949080	14	3.7	14	75	20	51	43	22	22	10	1.84
948967--949097	33	3.8	33	89	5	181	46	22	21	9	1.80
948966--949102	52	2.6	51	74	7	141	45	21	21	10	1.81
949114--949172	14	3.9	14	74	20	55	6	15	28	49	1.70
949098--949221	33	3.7	33	89	1	176	8	16	27	46	1.77
949098--949156	19	3.4	19	77	22	83	6	15	30	47	1.71
949098--949189	19	5.4	18	67	24	56	7	16	28	47	1.73
949319--949820	93	5.4	93	98	0	977	45	18	13	22	1.84
951498--951559	20	3.0	21	80	4	90	46	16	25	11	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12