genome.fa.s8721.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008721.1 Hibiscus syriacus cultivar Beakdansim tig00111779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2464137

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159332--159468	60	2.3	59	86	3	193	33	15	18	32	1.92
161428--161469	4	10.5	4	89	0	57	54	0	2	42	1.13
161428--161469	6	7.0	6	86	0	57	54	0	2	42	1.13
163971--164105	41	3.1	41	78	14	121	54	5	14	25	1.62
163930--164177	43	5.7	43	75	14	172	53	6	12	27	1.62
163944--164178	87	2.7	85	77	13	225	55	5	11	27	1.58
164663--164843	100	1.8	99	85	3	256	43	14	16	25	1.86
165839--165960	61	2.0	61	80	6	140	32	22	13	31	1.92
166081--166127	22	2.1	22	96	0	85	17	42	19	21	1.89
166462--166500	20	2.0	20	89	0	60	56	17	10	15	1.66
168034--168130	42	2.3	42	91	3	151	26	35	20	17	1.95
168705--168800	21	4.6	21	83	5	122	22	34	16	26	1.95
170509--170544	18	2.0	18	88	0	54	16	2	22	58	1.51
172796--172850	24	2.3	24	87	0	74	36	14	18	30	1.91
172962--172995	12	2.8	12	90	0	50	14	0	29	55	1.40
173786--173892	40	2.7	40	79	2	108	34	9	22	33	1.86
173896--173973	21	3.8	20	84	5	84	32	14	23	30	1.94
173904--173973	21	3.4	20	83	11	88	30	14	24	31	1.94
173937--173982	21	2.2	21	88	7	67	34	15	26	23	1.94
173946--174063	42	2.9	41	79	9	107	26	12	29	31	1.93
178948--179139	96	2.0	96	100	0	384	17	17	21	42	1.89
182123--182169	4	11.8	4	100	0	94	25	0	23	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186393--186447	26	2.1	26	82	0	65	36	25	14	23	1.93
189869--189933	23	2.8	23	97	0	121	9	32	24	33	1.87
202509--202569	20	2.9	20	80	9	68	22	36	26	14	1.93
204821--204857	19	1.9	19	100	0	74	45	0	10	43	1.39
208210--208243	16	2.1	16	94	0	59	17	2	5	73	1.16
215119--215155	19	1.9	19	88	0	56	35	24	13	27	1.93
215246--215373	20	6.3	20	78	10	143	30	27	20	21	1.98
215246--215373	61	2.1	61	95	0	229	30	27	20	21	1.98
216176--216229	24	2.2	24	86	0	72	24	18	16	40	1.90
218693--218939	20	13.3	20	66	16	66	36	20	19	23	1.95
218700--218843	54	2.7	54	91	0	207	36	18	20	24	1.94
218746--218949	74	2.8	73	82	3	239	38	20	18	23	1.94
218820--218921	53	1.9	54	87	2	152	37	22	16	23	1.94
219091--219156	30	2.2	30	94	0	114	53	12	3	31	1.53
220543--220643	42	2.4	42	76	3	105	23	19	33	22	1.97
221100--221143	20	2.2	20	100	0	88	52	22	11	13	1.72
221130--221241	20	5.7	19	85	9	145	38	24	18	18	1.93
221284--221420	34	3.9	34	80	11	166	19	21	22	35	1.96
221284--221428	74	2.0	74	95	0	263	20	21	21	36	1.95
221284--221431	20	8.0	20	69	17	104	20	21	21	36	1.95
221558--221619	31	2.0	31	87	9	90	51	17	8	22	1.71
223443--223491	20	2.5	20	86	0	62	36	24	18	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223904--223978	22	3.4	21	76	8	78	18	16	41	24	1.90
224158--224228	21	3.4	21	77	11	83	19	22	26	30	1.98
224142--224207	20	3.2	20	77	12	80	22	21	27	28	1.99
224130--224228	41	2.4	41	89	0	153	23	22	24	30	1.99
224130--224248	41	2.9	41	86	2	141	24	21	22	31	1.99
224216--224262	20	2.3	20	85	10	60	31	21	14	31	1.94
224335--224371	19	1.9	19	88	0	56	21	13	29	35	1.92
224569--224651	21	3.9	21	80	7	80	22	34	25	16	1.95
228697--228740	16	2.7	16	80	16	54	11	0	29	59	1.32
233131--233188	24	2.4	25	82	5	66	43	3	3	50	1.36
234357--234384	2	14.0	2	100	0	56	50	50	0	0	1.00
234507--234546	2	20.0	2	100	0	80	50	0	0	50	1.00
236173--236215	21	2.0	21	90	0	68	30	25	25	18	1.98
237635--237702	23	3.0	23	80	0	82	19	25	25	30	1.98
246239--246414	60	2.9	59	78	7	176	32	16	5	45	1.71
246546--246651	29	3.6	28	73	13	79	47	4	16	31	1.68
249704--249745	18	2.3	18	91	0	66	16	47	21	14	1.82
249722--249751	13	2.3	13	94	0	51	16	43	23	16	1.87
250594--250629	17	2.1	18	89	5	56	47	5	13	33	1.67
252283--252398	24	4.8	24	84	6	137	25	16	18	39	1.91
252360--252408	24	2.0	24	88	0	71	26	14	18	40	1.89
252581--252617	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254546--254592	10	5.5	8	82	14	51	14	34	27	23	1.94
254549--254582	15	2.1	16	89	10	52	11	35	29	23	1.90
257102--257162	12	5.2	11	79	14	68	26	11	19	42	1.85
257102--257217	24	4.8	24	84	6	137	24	14	18	42	1.88
257154--257227	24	3.1	24	86	3	78	21	16	18	43	1.88
257985--258054	18	3.8	18	85	7	104	27	31	21	20	1.98
257981--258054	38	1.9	38	94	0	130	27	29	20	22	1.98
261712--261760	21	2.3	21	92	0	89	4	34	18	42	1.69
263163--263230	18	3.7	18	77	14	75	29	29	19	22	1.98
263154--263230	38	2.0	38	90	5	120	28	27	18	25	1.98
264845--264920	21	3.5	22	78	12	68	31	27	26	14	1.95
264884--264928	23	2.0	23	95	0	81	28	26	28	15	1.96
265132--265168	19	2.0	18	89	5	56	54	13	5	27	1.61
275576--275636	27	2.3	27	97	0	113	31	13	14	40	1.84
286081--286117	2	18.5	2	100	0	74	48	0	0	51	1.00
297474--297530	21	2.7	21	77	0	69	24	17	22	35	1.95
311188--311242	19	2.8	20	86	5	69	16	25	30	27	1.96
311244--311280	14	2.6	14	100	0	74	21	51	21	5	1.68
317037--317076	21	1.9	21	85	10	55	35	10	2	52	1.48
327988--328036	25	2.0	25	87	0	71	51	16	8	24	1.71
336028--336105	40	2.0	40	92	0	129	35	19	16	28	1.93
336424--336458	16	2.2	16	89	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340370--340492	49	2.5	49	83	0	174	22	17	29	30	1.96
347526--347572	3	17.0	3	83	16	57	29	0	2	68	1.02
347522--347572	13	4.0	13	74	20	54	29	0	1	68	1.00
347525--347572	19	2.6	18	86	6	60	29	0	2	68	1.01
347527--347571	16	2.8	16	82	0	63	28	0	2	68	1.01
347516--347559	23	2.0	23	91	8	74	22	0	4	72	1.02
349961--350020	28	2.1	28	84	6	77	35	3	0	61	1.12
354299--354374	10	7.6	10	81	10	93	84	0	14	1	0.69
354298--354374	21	3.8	20	82	14	97	83	0	15	1	0.72
354299--354374	31	2.6	29	86	12	109	84	0	14	1	0.69
359754--360198	113	3.9	113	80	9	556	39	13	19	27	1.90
359870--360284	124	3.5	124	80	10	563	39	14	20	26	1.90
360135--360179	24	1.9	23	82	13	56	48	6	26	17	1.72
359770--360284	236	2.2	235	95	1	922	39	13	20	26	1.90
360176--360379	102	2.0	102	89	2	311	36	16	19	27	1.93
360279--360500	123	1.8	123	86	3	322	38	13	19	27	1.90
360116--360595	226	2.1	224	83	8	573	38	13	20	26	1.90
360757--360806	3	18.0	3	84	15	63	30	0	2	68	1.01
360756--360806	19	2.7	19	90	0	75	29	0	1	68	1.00
360760--360804	16	2.8	16	89	0	63	28	0	2	68	1.01
369833--369893	23	2.7	23	81	0	86	27	26	26	19	1.99
370186--370887	352	2.0	352	99	0	1386	31	17	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379477--379535	26	2.4	25	80	8	75	13	16	10	59	1.61
382069--382479	206	2.0	206	92	0	678	33	21	20	24	1.97
384178--384380	114	1.8	111	87	7	302	35	10	27	26	1.89
388700--388902	114	1.8	111	88	7	311	35	10	28	25	1.89
396284--396324	13	3.3	13	80	13	59	60	7	4	26	1.43
396278--396324	24	2.0	24	100	0	94	63	8	4	23	1.40
396278--396317	11	3.5	11	80	12	53	67	10	2	20	1.31
397933--398015	42	2.0	42	92	0	139	18	12	18	51	1.75
397934--398025	42	2.2	42	88	3	132	17	13	19	50	1.78
398257--398305	22	2.2	22	88	0	71	51	2	0	46	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12