Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008772.1 Hibiscus syriacus cultivar Beakdansim tig00111877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3098974

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1817 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3067222--3067310
20
4.8
20
72
19
75
12
24
19
43
1.85
3067390--3067460
33
2.2
33
92
0
115
47
18
22
11
1.80
3067642--3067696
22
2.5
22
81
0
74
20
16
40
23
1.91
3067842--3068034
20
9.6
20
82
5
219
19
19
25
35
1.95
3067842--3068034
60
3.2
60
83
0
251
19
19
25
35
1.95
3068090--3068141
20
2.6
20
96
0
95
21
13
26
38
1.90
3068708--3068838
68
1.9
68
87
0
190
48
5
12
34
1.63
3072574--3072644
22
3.2
22
97
0
133
14
25
25
35
1.93
3073993--3074242
125
2.0
125
96
0
455
22
16
22
39
1.92
3074644--3074672
14
2.1
14
100
0
58
37
0
0
62
0.96
3074647--3074681
14
2.5
14
90
0
52
42
0
0
57
0.99
3077459--3077541
31
2.7
31
78
10
89
50
9
10
28
1.69
3077646--3077673
6
4.7
6
100
0
56
82
0
0
17
0.68
3080501--3080550
24
2.1
24
85
7
66
24
2
14
60
1.45
3087379--3087457
26
3.1
24
76
15
70
17
16
0
65
1.27
3092215--3092266
23
2.2
24
86
3
70
69
7
0
23
1.14
3092260--3092299
15
2.5
17
88
8
57
75
5
5
15
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!