genome.fa.s8772.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008772.1 Hibiscus syriacus cultivar Beakdansim tig00111877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3098974

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1817 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596024--596048	2	12.5	2	100	0	50	48	0	0	52	1.00
597765--597827	30	2.1	30	93	0	108	11	23	34	30	1.90
600292--600371	39	2.1	38	81	11	92	56	1	1	41	1.15
600364--600433	21	3.2	22	77	16	74	41	1	2	54	1.24
600368--600458	24	3.8	23	80	12	103	42	4	3	49	1.39
600381--600479	48	2.1	48	84	7	130	41	6	4	48	1.47
600536--600605	14	5.0	13	74	16	59	42	7	2	47	1.45
600371--600615	24	10.3	24	68	18	86	44	6	3	45	1.45
600544--600604	20	2.8	20	76	18	61	40	8	3	47	1.49
600558--600605	10	4.8	10	77	10	53	41	8	2	47	1.45
600860--600946	22	4.1	21	80	14	99	45	10	3	40	1.55
600887--600962	19	3.8	19	80	10	89	44	10	2	42	1.52
600865--600962	41	2.4	40	91	3	151	44	11	3	40	1.55
601051--601110	2	30.0	2	100	0	120	50	0	0	50	1.00
605355--605393	19	2.1	19	100	0	78	10	41	5	43	1.61
613005--613030	2	13.0	2	100	0	52	50	0	0	50	1.00
614001--614035	3	11.7	3	100	0	70	65	0	34	0	0.93
621406--621432	13	2.1	13	100	0	54	37	14	22	25	1.93
621598--621623	3	8.7	3	100	0	52	0	0	30	69	0.89
622078--622352	137	2.0	140	88	2	412	28	16	7	48	1.73
622917--623015	48	2.1	48	94	0	171	52	3	15	29	1.57
624058--624085	13	2.2	13	100	0	56	42	14	0	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642960--642984	12	2.1	12	100	0	50	36	0	24	40	1.55
645133--645183	23	2.2	23	89	6	77	47	11	15	25	1.80
647490--647514	12	2.1	12	100	0	50	36	0	24	40	1.55
649243--649292	19	2.6	19	80	0	64	30	16	8	46	1.75
652592--652718	62	2.0	63	98	1	247	29	12	14	43	1.83
653031--653070	21	1.9	21	100	0	80	27	20	25	27	1.99
653551--653598	20	2.5	19	80	12	53	41	0	0	58	0.98
653700--653750	23	2.2	23	82	0	57	45	1	1	50	1.24
653850--653922	29	2.5	30	72	12	73	50	0	1	47	1.09
655523--656060	246	2.2	246	86	1	729	29	22	22	25	1.99
657138--657198	21	2.9	21	67	2	59	68	1	1	27	1.08
657673--657710	20	1.9	20	84	10	51	52	2	0	44	1.14
657698--657755	26	2.2	26	87	0	89	44	0	1	53	1.10
657841--657865	12	2.1	12	100	0	50	60	0	0	40	0.97
657808--657876	28	2.5	28	81	13	88	53	0	0	46	1.00
657809--657885	29	2.8	26	79	11	82	51	1	0	46	1.09
659456--660039	291	2.0	293	98	0	1145	39	17	10	32	1.84
660528--660610	39	2.1	39	88	4	123	50	14	7	27	1.69
660584--660624	14	3.1	14	86	6	59	46	17	7	29	1.74
662090--662159	35	2.0	35	97	0	131	31	12	11	44	1.78
662662--662763	23	4.3	24	81	6	120	35	24	20	19	1.96
663327--663367	20	2.0	21	85	9	57	21	26	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667344--667577	117	2.0	117	100	0	468	29	23	12	33	1.92
669850--669902	23	2.3	23	83	0	70	35	22	20	20	1.96
672669--672970	103	2.9	103	80	4	315	36	17	15	30	1.91
673248--673294	20	2.3	19	82	17	51	48	2	4	44	1.34
678708--678746	14	2.7	14	84	4	51	2	20	2	74	1.06
690589--690620	16	2.0	16	93	0	55	12	15	25	46	1.81
691678--691712	2	18.0	2	94	5	63	51	0	0	48	1.00
692573--692649	31	2.5	31	89	0	118	51	7	12	27	1.67
702966--703047	31	2.6	33	81	13	100	30	10	20	37	1.87
703633--703692	22	2.7	22	86	0	84	30	21	6	41	1.79
704665--704729	30	2.2	30	100	0	130	26	12	26	35	1.91
712104--712138	15	2.3	15	90	0	52	48	5	8	37	1.58
714439--714487	21	2.3	22	86	13	68	67	0	20	12	1.22
717583--717666	42	2.0	42	100	0	168	30	14	23	30	1.94
718058--718097	2	20.0	2	100	0	80	50	0	0	50	1.00
720160--720227	34	2.0	35	82	8	86	23	10	20	45	1.81
722969--723274	169	1.8	169	87	4	456	40	16	20	22	1.91
725728--726140	205	2.0	207	99	0	812	24	12	15	46	1.81
728414--728579	85	2.0	85	84	4	219	30	18	19	31	1.96
731975--732017	21	2.0	21	82	8	52	41	9	0	48	1.35
733856--733892	19	1.9	19	88	0	56	29	8	18	43	1.79
735543--735573	16	1.9	16	93	0	53	19	6	19	54	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740283--740469	93	2.0	94	98	1	367	31	22	25	20	1.98
741077--741134	2	29.5	2	96	3	109	50	0	0	50	1.00
744040--744075	18	2.0	18	88	0	54	27	13	0	58	1.36
755671--755765	43	2.2	43	82	0	127	37	20	17	24	1.93
759998--760101	51	2.0	51	98	0	199	27	13	14	44	1.83
776356--776470	57	2.0	57	81	6	135	51	4	2	41	1.35
784081--784131	18	2.8	18	84	0	75	17	19	33	29	1.95
789229--789256	13	2.2	13	100	0	56	7	32	7	53	1.55
789232--789265	13	2.5	13	90	4	50	14	23	8	52	1.69
791957--791989	2	16.5	2	100	0	66	48	0	0	51	1.00
811271--811342	12	6.4	12	77	18	50	76	0	19	4	0.95
811277--811338	4	15.8	4	79	15	67	79	0	19	1	0.82
812304--812339	2	18.0	2	100	0	72	50	0	0	50	1.00
817543--817580	2	19.0	2	100	0	76	50	0	0	50	1.00
819358--819413	21	2.7	21	97	0	103	30	32	25	12	1.92
820272--820348	20	3.7	20	76	17	68	22	27	20	29	1.98
821375--821409	2	17.5	2	100	0	70	51	0	0	48	1.00
823299--823379	31	2.6	30	84	5	99	34	11	24	29	1.90
826836--826913	31	2.5	31	87	0	102	25	23	12	38	1.90
827384--827437	28	2.0	28	85	3	74	46	9	1	42	1.46
827682--827759	29	2.7	29	77	18	83	33	24	2	39	1.69
827941--828027	31	2.9	30	74	15	90	48	3	13	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
827892--828070	60	3.0	59	73	3	151	43	4	18	34	1.70
833290--833464	35	4.6	38	78	16	141	48	1	8	42	1.43
833435--833488	27	1.9	29	88	7	85	48	3	3	44	1.38
833475--833522	2	24.0	2	100	0	96	50	0	0	50	1.00
833508--833593	38	2.4	37	86	7	122	46	1	4	47	1.30
833409--833593	100	1.9	98	83	6	239	47	1	4	46	1.32
833679--833733	28	1.9	29	85	10	78	32	0	0	67	0.91
833687--833751	12	5.7	11	76	16	62	27	1	0	70	0.96
833719--833750	14	2.3	14	94	0	55	21	3	0	75	0.95
834901--834937	3	12.7	3	88	5	58	35	0	0	64	0.94
846858--846918	3	20.3	3	79	0	68	24	0	39	36	1.56
846837--846913	9	8.6	9	86	0	82	19	0	46	33	1.50
848309--848528	116	1.9	116	82	5	275	39	17	9	33	1.82
850010--850041	17	1.9	17	93	6	57	34	0	0	65	0.93
852584--852631	21	2.3	21	89	7	71	14	27	18	39	1.90
852586--852628	21	2.0	22	95	4	79	13	25	18	41	1.88
852592--852638	21	2.2	21	85	7	60	19	25	19	36	1.95
852628--852679	21	2.5	21	81	3	61	38	19	23	19	1.93
852647--852740	41	2.3	42	85	5	129	35	25	20	19	1.96
852668--852802	20	6.7	20	85	5	137	30	25	19	24	1.98
853539--853585	24	2.0	24	91	0	76	29	19	17	34	1.94
853544--853590	24	1.9	24	86	4	67	27	19	17	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856065--856120	20	2.8	20	91	0	94	39	23	21	16	1.92
857721--857812	42	2.2	42	88	1	141	20	15	42	21	1.89
857748--857808	21	2.9	21	73	9	70	21	13	42	22	1.87
858175--858227	20	2.7	20	90	0	88	33	24	26	15	1.95
858175--858248	20	3.8	19	85	5	85	36	21	25	16	1.94
858214--858291	19	4.4	19	79	15	94	48	20	17	12	1.80
858230--858323	33	2.8	33	90	0	134	52	22	14	10	1.73
858249--858307	14	3.9	14	76	20	55	54	22	13	10	1.69
858319--858385	19	3.8	19	71	18	72	13	17	20	47	1.81
858341--858399	14	3.9	14	74	20	55	11	15	23	49	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16