genome.fa.s8772.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008772.1 Hibiscus syriacus cultivar Beakdansim tig00111877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3098974

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1817 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255879--255930	27	1.9	27	96	0	95	38	15	3	42	1.65
255808--255991	29	6.3	29	77	8	133	41	21	3	33	1.71
255952--256015	29	2.2	29	80	0	74	48	21	6	23	1.73
257894--257933	18	2.2	18	90	0	62	47	17	7	27	1.74
257954--258024	29	2.4	31	79	18	87	49	0	12	38	1.41
263255--263382	60	2.1	61	82	7	163	36	4	25	33	1.77
265524--265557	2	17.0	2	100	0	68	50	0	0	50	1.00
268788--268859	25	2.9	25	100	0	144	41	4	8	45	1.53
269559--269673	57	2.0	57	98	0	221	31	25	15	27	1.96
271473--271516	20	2.1	21	87	4	63	56	0	0	43	0.99
279554--279692	36	3.9	35	86	3	190	35	20	25	17	1.95
279549--279692	71	2.0	71	91	2	236	37	20	25	17	1.93
283492--283644	43	3.6	43	89	5	220	26	20	24	28	1.99
285693--285960	135	2.0	132	97	2	509	29	13	21	36	1.91
288488--288531	19	2.3	20	80	11	56	22	2	61	13	1.43
288880--289325	83	5.4	83	88	1	592	32	17	21	28	1.96
288880--289356	41	11.5	41	81	9	431	31	18	21	28	1.96
290279--290330	27	2.0	27	84	3	70	55	13	13	17	1.69
290511--290597	30	3.0	29	80	5	95	47	5	18	28	1.71
290523--290597	29	2.5	30	84	2	89	45	5	18	30	1.72
291472--291540	14	4.9	14	82	3	66	28	30	17	23	1.97
291477--291540	29	2.2	28	83	2	74	29	29	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300823--300877	23	2.5	22	88	5	85	27	20	18	34	1.95
301162--301192	16	1.9	16	93	0	53	25	6	16	51	1.68
303081--303115	12	2.8	13	86	8	54	45	8	5	40	1.58
303211--303249	19	2.0	20	90	5	62	38	5	2	53	1.37
306534--306565	2	16.0	2	100	0	64	50	0	0	50	1.00
307236--307338	3	34.7	3	94	1	181	66	0	0	33	0.99
307535--308035	134	3.8	134	87	2	634	31	19	19	29	1.96
308033--308391	38	9.4	38	92	2	569	41	18	17	22	1.90
309945--309996	22	2.3	22	83	6	59	38	3	3	53	1.37
311111--311226	35	3.3	36	90	3	157	31	3	18	45	1.66
315692--315752	21	3.2	21	65	29	64	31	4	21	42	1.74
315686--315800	35	3.3	35	89	4	169	29	6	21	41	1.79
317808--317838	13	2.4	13	100	0	62	16	12	29	41	1.85
318399--318432	17	2.0	17	94	0	59	73	0	0	26	0.83
320555--320611	3	19.0	3	100	0	114	66	0	0	33	0.92
320793--321088	138	2.2	136	85	1	394	25	16	29	28	1.97
330980--331054	23	3.5	21	82	8	89	24	21	21	33	1.97
331320--331350	16	1.9	16	93	0	53	25	6	16	51	1.68
336226--336274	7	6.7	7	79	9	53	12	10	0	77	0.99
336226--336274	15	3.3	15	97	2	91	12	10	0	77	0.99
337407--337469	3	21.7	3	83	6	85	65	0	1	33	1.03
337406--337469	26	2.6	26	85	7	89	65	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337407--337468	32	1.9	32	93	0	106	64	0	1	33	1.03
337671--338167	134	3.7	134	86	2	624	31	19	18	30	1.96
338165--338486	38	8.4	38	90	0	500	42	18	17	21	1.89
340013--340056	22	2.1	21	87	8	63	47	9	0	43	1.35
340045--340100	22	2.5	22	97	0	103	44	1	3	50	1.29
340058--340109	17	2.7	19	82	14	54	42	1	5	50	1.37
340080--340114	17	2.1	17	89	5	54	45	2	5	45	1.41
342803--342888	38	2.3	38	97	0	163	30	11	19	38	1.88
345283--345316	11	3.1	11	86	0	50	14	0	0	85	0.60
351253--351424	61	2.8	61	90	0	272	36	21	12	29	1.90
351726--351985	36	7.2	36	90	0	358	26	20	13	38	1.90
351758--351855	21	5.2	21	62	26	67	26	21	11	40	1.87
351726--351985	72	3.6	72	88	1	403	26	20	13	38	1.90
351726--351985	109	2.4	108	90	0	403	26	20	13	38	1.90
351726--352085	138	2.6	140	87	6	453	26	20	14	39	1.90
352138--352258	33	3.6	33	85	4	152	42	17	8	31	1.78
352256--352415	84	1.9	83	90	1	257	30	26	19	23	1.98
354397--354425	13	2.1	14	93	6	51	48	17	20	13	1.81
353784--354593	408	2.0	408	95	0	1442	36	20	15	28	1.93
354866--354919	20	2.7	21	85	8	85	40	16	16	25	1.89
357815--357892	14	5.5	14	83	6	95	25	25	20	28	1.99
357893--357919	13	2.1	13	100	0	54	14	25	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361241--361314	21	3.5	21	98	0	139	28	22	14	33	1.94
367123--367184	23	2.9	21	80	17	81	25	20	17	35	1.95
367466--367496	16	1.9	16	93	0	53	25	6	16	51	1.68
369369--369403	12	2.8	13	82	8	54	42	8	5	42	1.59
371112--371308	42	4.7	42	92	1	335	20	18	24	37	1.94
372157--372533	42	9.1	42	80	5	394	36	24	17	22	1.95
372470--372560	21	4.5	20	85	10	98	28	29	21	19	1.98
372517--372550	17	2.0	17	100	0	68	29	23	23	23	1.99
372352--372560	38	5.2	39	73	19	135	32	27	17	22	1.96
374062--374127	33	2.0	34	82	8	82	62	6	6	25	1.42
374665--374708	2	22.0	2	100	0	88	50	0	0	50	1.00
375409--375471	3	21.7	3	87	6	94	66	0	0	33	0.92
375630--376354	134	5.4	134	86	3	874	31	18	19	30	1.96
376944--377181	45	5.3	45	78	5	214	45	17	15	21	1.85
376969--377181	89	2.4	90	82	2	241	43	18	15	22	1.87
376936--377181	134	1.8	134	81	6	311	43	19	15	21	1.87
376944--377181	89	2.7	89	81	2	235	45	17	15	21	1.85
376969--377853	38	21.9	42	82	6	439	40	18	17	23	1.91
377277--377860	38	15.2	38	87	3	774	39	19	19	22	1.92
377203--377860	76	8.4	76	87	3	787	38	18	18	23	1.93
377203--377860	114	5.6	114	88	3	787	38	18	18	23	1.93
383774--383812	13	3.1	13	85	3	53	0	43	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391602--391652	3	17.0	3	100	0	102	66	0	0	33	0.92
391838--392129	138	2.1	136	86	1	395	26	17	29	27	1.98
395806--395955	60	2.5	60	82	7	180	39	4	23	32	1.75
395854--395971	60	2.0	60	84	3	157	40	5	22	31	1.76
396062--396158	45	2.2	45	98	0	185	24	28	20	25	1.99
397643--397668	2	13.0	2	100	0	52	50	0	0	50	1.00
400333--400360	13	2.2	13	100	0	56	28	35	0	35	1.58
407553--407581	11	2.6	11	100	0	58	82	0	17	0	0.66
421825--421896	32	2.2	32	82	0	90	30	16	16	36	1.91
422076--422247	61	2.8	61	90	0	272	35	21	13	29	1.92
422549--422699	36	4.2	36	90	0	221	28	21	13	37	1.91
422549--422837	72	4.1	72	79	8	306	26	20	13	38	1.90
422575--422922	138	2.5	138	91	0	545	25	19	14	40	1.89
422714--422837	36	3.4	36	86	3	178	25	20	14	39	1.91
422990--423109	32	3.8	32	86	7	165	39	20	9	31	1.84
425502--425572	33	2.1	34	92	2	117	40	14	15	29	1.86
432324--432350	3	9.0	3	100	0	54	66	0	0	33	0.92
432494--432775	138	2.1	136	86	1	393	24	17	30	27	1.97
435452--435525	3	25.0	3	75	8	71	31	1	0	67	0.99
435431--435525	15	5.5	18	70	22	62	28	1	2	68	1.08
435452--435525	15	5.0	15	81	1	87	31	1	0	67	0.99
436027--436079	7	7.4	7	79	12	63	81	1	16	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436018--436079	11	5.7	11	85	9	83	80	1	17	0	0.79
436954--436981	13	2.2	13	100	0	56	28	0	7	64	1.20
436982--437013	3	10.7	3	93	0	55	31	3	0	65	1.08
437288--437367	35	2.3	35	78	10	83	50	2	0	47	1.14
441167--441198	15	2.1	15	94	0	55	25	18	9	46	1.79
444371--444406	10	3.6	10	96	0	63	22	8	0	69	1.15
447930--447972	21	2.0	21	86	13	61	88	0	11	0	0.52
447931--447972	18	2.3	18	92	8	68	88	0	11	0	0.53
448325--448373	19	2.8	17	81	9	55	36	10	6	46	1.63
448667--449003	114	3.0	114	93	0	548	33	14	20	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16