genome.fa.s8803.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008803.1 Hibiscus syriacus cultivar Beakdansim tig00111954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1826237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1039 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463869--464051	31	5.9	31	75	11	72	46	3	3	45	1.39
464063--464116	17	3.0	17	86	8	63	40	1	1	55	1.21
463949--464130	20	9.4	19	71	17	108	45	3	3	47	1.37
463818--464118	74	4.0	80	76	15	194	46	4	2	46	1.38
465475--465516	17	2.4	18	80	11	52	2	21	30	45	1.65
466166--466221	27	2.0	28	83	10	71	41	10	0	48	1.38
466297--466347	16	3.2	16	80	0	57	31	15	23	29	1.95
466894--466941	23	2.1	23	88	0	69	37	8	16	37	1.79
467170--467208	20	2.0	20	89	0	60	35	15	7	41	1.76
467683--468205	182	2.9	181	91	1	816	27	17	12	42	1.84
468076--468354	112	2.5	112	96	0	504	24	16	14	44	1.85
468677--468710	16	2.0	18	88	11	54	52	0	0	47	1.00
469580--469628	19	2.6	19	80	0	62	71	2	8	18	1.21
470122--470179	2	29.0	2	100	0	116	50	0	0	50	1.00
470688--470739	22	2.5	20	84	9	59	55	0	3	40	1.18
475619--475691	23	3.2	23	86	0	92	38	19	5	36	1.75
476060--476122	23	2.7	23	90	0	99	38	22	3	36	1.70
475453--476457	432	2.3	430	96	1	1825	40	12	7	40	1.71
479882--479941	20	2.9	21	85	5	68	18	25	35	21	1.96
479861--479941	20	4.0	20	73	12	65	16	23	35	24	1.94
485975--486023	21	2.2	23	92	7	84	36	20	6	36	1.78
486377--486435	23	2.6	23	88	0	82	40	16	5	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485970--487055	418	2.6	415	89	7	1688	38	12	7	41	1.71
486779--486848	20	3.3	21	90	6	97	40	21	4	34	1.73
486779--486853	23	3.5	22	89	5	93	41	20	4	34	1.71
487253--487324	23	3.2	23	92	4	119	37	22	5	34	1.77
487743--487807	23	2.8	23	95	0	112	40	21	4	33	1.74
486625--488159	491	3.2	491	92	4	2600	40	11	7	40	1.70
488159--488223	25	2.6	25	95	0	112	38	12	9	40	1.75
492002--492097	3	32.0	3	76	0	75	21	33	9	35	1.86
492031--492109	12	6.6	12	77	11	90	17	34	12	35	1.88
492003--492100	24	4.0	24	84	7	115	20	33	10	35	1.86
493578--494549	200	4.9	200	97	0	1824	30	17	14	37	1.90
493578--494549	398	2.4	400	97	1	1817	30	17	14	37	1.90
494630--494674	19	2.4	18	82	7	54	53	11	2	33	1.49
494642--494686	19	2.4	19	96	0	81	55	11	2	31	1.47
496524--496588	21	3.1	21	93	0	103	16	30	10	41	1.83
498614--498666	24	2.2	24	83	6	63	26	7	13	52	1.66
498806--498848	20	2.3	18	85	14	61	20	16	11	51	1.75
498811--498857	20	2.4	19	82	10	67	19	17	10	53	1.72
498778--499229	181	2.5	182	87	1	647	27	17	13	41	1.87
499296--499789	228	2.2	228	96	1	911	39	7	7	45	1.62
514778--514885	39	2.8	39	80	5	112	20	20	25	33	1.97
514778--514907	39	3.3	38	78	9	104	23	19	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519733--519827	24	4.0	24	81	2	102	48	16	13	21	1.81
523622--523727	54	2.0	54	98	0	203	46	11	19	22	1.82
523743--523778	3	12.3	3	94	5	65	30	0	0	69	0.89
524844--524927	14	5.8	14	74	14	55	39	3	4	52	1.40
524882--524914	16	2.0	17	88	5	50	33	0	9	57	1.30
525398--525445	2	24.0	2	95	0	87	52	0	0	47	1.00
525871--525991	60	2.0	60	85	9	167	60	1	3	34	1.23
526338--526442	37	2.8	37	85	0	138	29	14	14	41	1.85
526985--527609	105	6.0	105	90	3	919	22	18	26	33	1.96
527809--527884	36	2.1	36	90	0	116	40	15	21	22	1.90
527784--528104	106	3.1	105	90	3	499	37	11	20	30	1.89
528099--528175	39	2.0	39	84	0	100	38	14	16	29	1.88
528221--528334	36	3.2	36	70	2	104	43	13	16	26	1.84
528175--528345	72	2.3	75	84	7	208	41	12	18	27	1.87
529373--529908	183	2.9	182	94	0	921	30	20	21	27	1.98
533830--533878	5	10.6	5	83	16	70	79	0	0	20	0.73
533831--533881	9	5.7	9	100	0	102	78	0	0	21	0.75
533831--533881	4	11.5	4	82	17	57	78	0	0	21	0.75
534352--534528	61	2.8	63	86	9	238	62	2	2	32	1.22
534487--534525	18	2.2	18	90	4	62	66	2	5	25	1.25
535007--535040	17	1.9	18	94	5	61	52	0	0	47	1.00
536138--536166	14	2.1	14	100	0	58	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543384--543866	241	2.0	241	99	0	948	29	19	15	35	1.93
551070--551100	2	15.5	2	100	0	62	51	0	0	48	1.00
552192--552252	25	2.4	24	73	10	59	50	3	0	45	1.17
561779--561839	27	2.3	27	91	5	97	36	14	27	21	1.93
572801--572956	52	2.9	55	75	10	158	39	8	17	33	1.80
573103--573756	81	8.1	81	88	2	902	37	10	21	30	1.87
573901--573953	2	26.5	2	100	0	106	50	0	0	49	1.00
578172--578337	56	3.0	56	88	0	262	37	13	16	32	1.88
578485--578952	81	5.8	81	87	4	588	37	11	20	31	1.88
583277--583442	56	3.0	56	88	0	262	37	13	16	32	1.88
583590--584811	81	15.1	81	89	1	1725	35	11	21	31	1.89
586705--586741	19	2.0	18	89	5	56	45	5	5	43	1.49
589295--589342	17	2.8	17	87	3	60	27	4	0	68	1.07
593945--593982	20	1.9	20	88	0	58	39	7	10	42	1.69
600042--600103	13	4.8	13	93	0	106	38	22	8	30	1.83
601991--602028	20	1.9	20	94	0	67	36	13	13	36	1.83
604062--604098	17	2.2	17	90	4	58	78	0	8	13	0.96
604608--604670	20	3.2	20	70	20	60	41	12	20	25	1.88
604608--604973	116	3.2	116	79	8	381	38	15	20	25	1.92
607213--607599	140	2.8	139	81	4	327	29	14	12	43	1.83
607303--607599	140	2.1	139	85	3	393	28	14	13	43	1.82
609335--609637	72	4.2	72	80	5	299	12	29	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609335--609637	144	2.1	144	81	2	340	12	29	13	44	1.81
609366--609703	72	4.7	72	82	1	320	13	29	14	42	1.83
618802--618868	22	3.0	22	69	4	62	31	23	20	23	1.98
618882--618925	22	2.0	22	95	0	79	25	27	20	27	1.99
618950--619003	20	2.8	19	88	5	74	24	31	20	24	1.98
619368--619437	33	2.1	33	86	0	95	32	15	31	20	1.94
621247--621312	33	1.9	34	87	6	98	24	28	22	24	1.99
621703--621772	33	2.1	33	89	0	104	31	15	30	22	1.95
623267--623304	20	1.9	20	94	0	67	65	7	0	26	1.19
629493--629528	18	1.9	19	88	5	56	41	22	8	27	1.82
635180--635229	21	2.4	21	89	0	82	28	30	20	22	1.98
635238--635403	21	7.6	21	73	15	113	22	22	22	31	1.98
635190--635494	111	2.7	111	92	1	495	24	23	20	30	1.98
635997--636041	20	2.3	20	88	3	65	35	0	24	40	1.56
637664--637724	16	3.5	18	73	13	56	75	0	3	21	0.94
637828--637878	2	26.0	2	82	11	61	50	1	3	43	1.31
640161--640481	65	4.8	65	74	10	234	39	10	20	29	1.86
640125--640343	65	3.3	67	82	6	232	37	9	21	31	1.86
640292--640598	36	8.9	36	71	14	216	38	13	20	28	1.90
640304--640396	37	2.6	36	85	1	114	41	16	22	19	1.89
640238--640497	138	1.9	138	89	0	403	40	13	20	26	1.89
640328--640598	101	2.7	102	86	2	348	38	13	19	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640533--640604	37	1.9	37	88	0	108	38	13	20	26	1.90
641183--641211	11	2.6	11	100	0	58	48	0	17	34	1.47
642063--642126	27	2.6	23	81	18	67	4	9	6	79	1.04
645023--645070	22	2.2	22	84	0	60	81	8	0	10	0.88
645128--645174	17	2.7	17	81	12	60	72	0	12	14	1.13
645200--645281	36	2.3	37	81	10	91	68	2	4	24	1.22
645270--645294	13	1.9	13	100	0	50	80	0	8	12	0.92
645275--645331	16	3.2	18	73	12	55	73	0	3	22	0.98
645441--645502	21	2.9	21	85	9	72	62	0	1	35	1.05
645458--645530	24	3.0	24	77	16	71	68	0	4	27	1.07

Tables:   1   2   3   4   5   6   7   8   9