genome.fa.s8803.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008803.1 Hibiscus syriacus cultivar Beakdansim tig00111954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1826237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1039 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646205--646247	23	1.9	23	86	13	63	39	2	9	48	1.48
648538--648565	2	14.0	2	100	0	56	50	0	0	50	1.00
649322--649756	193	2.2	194	84	5	560	42	11	14	31	1.81
650079--650539	230	2.0	226	86	4	631	35	8	21	34	1.83
651523--651587	29	2.2	29	86	0	94	24	10	29	35	1.89
651870--651911	19	2.2	20	87	12	61	50	9	14	26	1.73
652670--652761	35	2.6	35	82	3	123	34	4	33	27	1.77
654000--654045	21	2.2	20	81	7	56	26	13	15	45	1.82
653985--655578	445	3.6	447	90	0	2480	42	13	14	29	1.84
657389--657915	268	1.9	274	89	5	829	38	16	13	31	1.87
658136--658181	23	2.0	24	95	4	85	39	15	13	32	1.85
657967--658252	117	2.4	118	83	2	351	30	16	14	38	1.89
659969--659996	12	2.3	12	100	0	56	35	7	35	21	1.81
662863--662949	35	2.5	34	80	12	97	55	10	8	26	1.61
665157--665202	18	2.6	17	86	10	65	60	2	4	32	1.28
665362--665479	50	2.3	50	82	7	132	21	29	32	16	1.95
666596--666642	2	23.0	2	91	4	76	46	0	4	48	1.21
682430--682512	31	2.6	31	79	9	87	14	25	32	27	1.95
683517--683560	23	1.9	23	95	0	79	22	22	20	34	1.97
703731--703771	21	2.0	21	85	0	55	31	7	24	36	1.83
704584--704609	12	2.2	12	100	0	52	42	42	0	15	1.47
705344--705394	23	2.3	22	80	9	59	1	17	5	74	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712541--712596	30	2.0	27	83	13	69	35	23	0	41	1.55
724038--724062	2	12.5	2	100	0	50	0	48	0	52	1.00
728027--728083	29	1.9	30	86	10	82	43	7	17	31	1.76
729419--729461	21	2.0	21	81	0	50	27	27	25	18	1.98
730370--730466	32	3.1	32	78	14	128	28	17	18	35	1.94
730369--730469	31	3.2	31	81	10	125	28	18	18	33	1.95
730457--730550	30	3.1	30	90	3	136	20	21	27	30	1.98
734419--734461	21	2.0	21	81	0	50	27	27	25	18	1.98
735380--735476	32	3.1	32	78	14	128	28	17	18	35	1.94
735379--735479	31	3.2	31	81	10	125	28	18	18	33	1.95
735467--735560	30	3.1	30	89	3	127	21	20	27	30	1.98
736305--736344	20	2.1	19	85	4	53	30	10	2	57	1.45
738895--738952	21	2.8	21	94	2	100	20	5	22	51	1.67
738895--738952	20	2.9	19	90	7	80	20	5	22	51	1.67
739195--739243	14	3.5	14	94	0	80	18	16	10	55	1.69
739506--739563	23	2.5	24	88	2	82	8	12	20	58	1.59
739629--739661	16	2.1	16	100	0	66	6	12	24	57	1.57
741180--741242	33	1.9	33	86	0	90	26	25	15	31	1.96
741609--741646	20	1.9	20	88	0	58	31	15	15	36	1.90
741686--741774	20	4.6	19	85	1	106	32	16	13	37	1.88
746638--746843	64	3.2	64	81	8	213	30	24	16	27	1.97
748894--748933	20	2.0	21	85	14	57	37	15	5	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748893--748937	20	2.2	20	80	11	56	40	13	4	42	1.64
754923--755128	64	3.2	64	79	10	197	32	24	15	27	1.95
760122--760167	23	2.0	23	91	0	74	21	21	26	30	1.99
761470--761659	64	3.0	64	79	9	190	31	24	17	26	1.97
764266--764341	20	3.8	20	87	1	109	32	17	10	39	1.83
765233--765273	21	2.0	21	95	0	73	24	26	24	24	2.00
766170--766295	32	3.9	31	84	8	155	35	19	14	30	1.92
766107--766295	64	3.0	62	76	11	170	34	20	14	30	1.93
767259--767313	20	2.8	20	100	0	110	25	34	16	23	1.95
769374--769682	45	6.8	45	81	1	339	28	21	9	40	1.85
769374--769682	91	3.4	90	78	7	320	28	21	9	40	1.85
769374--769684	136	2.3	136	92	1	507	28	21	9	40	1.85
770792--770847	23	2.4	24	88	8	73	26	32	3	37	1.74
770801--770847	23	2.0	23	95	0	85	29	27	4	38	1.76
770988--771014	2	13.5	2	100	0	54	51	0	0	48	1.00
775752--775793	21	2.0	22	85	4	59	40	19	2	38	1.64
776430--776634	88	2.3	88	80	5	218	29	19	9	40	1.84
776439--776641	45	4.6	45	79	6	225	29	19	10	41	1.84
777271--777326	22	2.7	21	79	15	64	25	30	16	28	1.96
777223--777400	95	1.9	95	81	4	216	27	25	15	31	1.96
778005--778033	2	14.5	2	100	0	58	51	0	0	48	1.00
793026--793199	88	2.0	88	93	0	294	38	10	5	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794771--794808	14	2.4	16	83	16	53	68	0	0	31	0.90
794942--794969	2	14.0	2	100	0	56	50	0	0	50	1.00
795237--795537	149	2.0	152	95	4	547	45	16	16	21	1.85
796394--796453	3	21.0	3	80	19	67	70	0	1	28	0.97
796396--796452	27	2.0	29	87	12	84	70	0	1	28	0.98
796394--796468	10	7.1	11	78	17	63	69	0	4	26	1.06
797482--797513	16	2.0	16	100	0	64	43	6	12	37	1.68
798640--798725	37	2.4	36	88	3	120	19	22	25	32	1.97
801685--801723	21	1.9	21	89	5	62	17	25	23	33	1.96
801686--801784	10	10.3	9	72	12	63	18	27	25	29	1.98
801686--801784	29	3.4	29	79	8	103	18	27	25	29	1.98
801714--801778	19	3.4	19	77	12	62	18	24	27	29	1.98
801780--801818	17	2.3	17	100	0	78	17	46	23	12	1.83
808580--808695	19	6.1	19	86	8	146	17	28	27	26	1.97
808561--808691	29	4.5	28	79	7	129	16	28	26	28	1.97
808560--808695	38	3.5	38	82	9	159	17	27	26	27	1.98
808694--808752	5	10.8	5	76	16	55	18	52	22	6	1.68
808590--808708	57	2.1	57	81	6	134	16	31	27	23	1.96
808694--808759	22	3.0	22	97	2	123	18	50	22	9	1.75
808749--808779	7	4.4	7	100	0	62	16	29	29	25	1.96
822158--822192	15	2.3	15	95	0	61	42	22	5	28	1.76
826621--826686	24	2.8	24	78	0	78	53	18	7	21	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826670--826730	24	2.5	24	82	10	72	49	14	9	26	1.75
840621--840822	105	1.9	105	84	0	269	40	21	14	23	1.91
844041--844157	30	3.7	30	68	19	85	29	16	14	40	1.88
844013--844193	66	2.7	67	88	3	260	27	17	14	40	1.88
845980--846013	17	1.9	18	88	5	52	20	8	2	67	1.31
852028--852080	2	26.5	2	100	0	106	49	0	0	50	1.00
853076--853511	222	2.0	224	96	0	813	25	15	4	54	1.60
853435--853475	20	2.0	20	86	9	57	17	2	2	78	0.98
853501--853567	15	4.2	15	74	18	55	20	1	0	77	0.85
853501--853597	46	2.2	44	79	15	112	21	4	0	74	0.99
853503--853597	15	6.1	15	70	18	54	22	4	0	73	1.00
853781--853820	11	3.6	11	86	0	53	5	7	0	87	0.66
853933--853991	24	2.5	24	83	5	66	27	3	0	69	1.04
857683--857723	21	2.0	21	85	0	55	46	2	29	21	1.64
864254--864332	1	79.0	1	69	0	50	84	0	15	0	0.61
864253--864332	6	13.0	6	84	10	108	83	0	16	0	0.64
864263--864330	23	3.1	22	91	8	113	83	0	16	0	0.64
865279--865697	121	3.4	121	86	2	572	36	25	14	23	1.93
867291--867348	15	4.0	14	82	13	64	13	3	0	82	0.79
867291--867346	8	7.4	8	77	18	50	12	3	0	83	0.76
867291--867346	22	2.5	22	88	11	87	12	3	0	83	0.76
867355--867406	19	2.7	19	74	14	52	26	3	0	69	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867374--867460	3	29.7	3	71	15	58	25	3	1	70	1.10
867377--867427	8	6.1	8	80	15	59	25	0	1	72	0.95
867372--867438	19	3.5	19	76	11	66	23	0	1	74	0.90
867814--867851	17	2.2	17	86	9	51	15	7	2	73	1.17
870278--870333	3	18.3	3	85	10	78	66	0	0	33	0.92
872621--872653	15	2.2	15	100	0	66	30	30	6	33	1.82
873443--874474	84	12.4	84	84	1	1101	24	19	22	33	1.97
875596--875854	95	2.7	95	86	5	351	32	16	17	33	1.92
881917--881965	22	2.3	22	89	3	73	40	28	2	28	1.68
882802--882841	20	2.0	20	100	0	80	40	10	10	40	1.72

Tables:   1   2   3   4   5   6   7   8   9