genome.fa.s8803.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008803.1 Hibiscus syriacus cultivar Beakdansim tig00111954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1826237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1039 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205331--205385	8	7.4	8	86	10	73	30	1	0	67	1.01
205908--205939	2	16.0	2	100	0	64	50	0	0	50	1.00
205988--206034	10	4.6	10	76	12	51	14	2	4	78	0.99
205991--206035	20	2.2	20	84	0	63	15	2	4	77	1.02
207080--207109	14	2.1	14	93	0	51	30	13	10	46	1.75
207739--207764	2	13.0	2	100	0	52	50	0	0	50	1.00
208927--209032	52	2.0	52	100	0	212	32	9	20	37	1.85
212754--212789	18	2.1	18	89	5	56	66	2	5	25	1.27
219053--219165	24	4.7	24	92	0	181	26	21	30	21	1.98
219164--219256	23	4.0	23	81	5	107	35	25	20	18	1.95
219167--219265	46	2.2	46	85	3	128	35	23	22	19	1.96
219177--219265	23	3.9	23	83	2	99	32	24	24	17	1.97
220933--221100	2	86.0	2	90	6	256	47	0	0	51	1.05
221426--221504	38	2.0	40	85	4	108	48	0	7	44	1.31
221460--221513	27	2.0	26	85	3	72	55	0	5	38	1.23
221499--221590	2	46.5	2	86	10	127	50	0	2	47	1.13
221575--221625	25	2.0	25	88	7	75	47	1	5	45	1.38
221575--221626	26	2.0	27	85	11	72	48	1	5	44	1.38
221591--221734	38	3.9	36	79	13	159	47	1	8	42	1.42
221753--221796	21	2.1	21	83	8	54	34	0	0	65	0.93
223033--223070	3	12.7	3	100	0	76	31	0	0	68	0.90
223114--223155	22	2.0	22	90	4	68	21	14	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223939--223989	25	2.0	25	100	0	102	31	21	19	27	1.97
225523--225804	138	2.1	136	84	3	359	30	12	16	40	1.85
228012--228147	73	1.9	73	95	0	245	40	16	11	31	1.84
228002--228133	38	3.5	38	67	22	116	39	18	10	31	1.85
235803--235835	6	5.5	6	96	0	57	87	12	0	0	0.53
236214--236245	16	2.0	16	100	0	64	56	25	12	6	1.59
236307--236379	16	4.7	16	85	9	89	60	19	8	12	1.57
236307--236373	32	2.2	30	89	5	98	61	17	7	13	1.55
240221--240282	24	2.6	24	92	0	97	51	22	12	12	1.74
240225--240305	34	2.4	34	75	4	83	48	22	14	14	1.81
250392--250461	35	2.0	35	91	2	115	25	11	12	50	1.74
255256--255327	17	4.2	17	82	5	74	36	13	9	40	1.78
261194--261354	85	1.9	85	89	2	252	31	16	21	31	1.95
261333--261364	13	2.5	13	94	0	55	34	15	18	31	1.93
263686--263949	2	138.0	2	66	26	112	51	6	0	41	1.33
263670--263853	29	6.6	28	71	24	113	53	4	0	41	1.25
263669--263968	7	43.1	7	71	17	173	52	6	1	40	1.34
263673--263880	5	41.2	5	67	25	86	52	4	0	42	1.26
263884--264035	19	8.1	19	70	19	61	50	10	2	36	1.51
272352--272409	30	1.9	30	89	6	91	13	41	0	44	1.44
272391--272437	21	2.1	23	88	7	71	4	27	0	68	1.08
284034--284065	14	2.1	16	88	11	50	28	6	12	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288075--288111	18	2.1	18	94	0	65	29	8	24	37	1.84
293228--293252	13	1.9	13	100	0	50	40	12	24	24	1.88
300773--301082	45	6.9	45	90	2	471	30	18	9	42	1.81
300773--301120	135	2.6	135	87	1	446	29	19	9	41	1.83
301530--301584	22	2.7	20	78	15	67	25	30	14	29	1.95
301530--301770	95	2.5	95	82	6	274	28	25	16	29	1.96
301624--301696	22	3.5	22	78	8	75	27	26	16	30	1.97
311582--311792	102	2.1	102	91	0	350	41	21	17	18	1.90
320341--320376	18	2.0	18	88	0	54	30	19	13	36	1.91
331416--331454	3	13.7	3	84	10	55	30	0	0	69	0.89
331416--331454	8	4.6	9	84	12	55	30	0	0	69	0.89
332062--332093	12	2.7	12	100	0	64	21	25	9	43	1.82
340764--340809	24	1.9	24	81	0	56	19	17	21	41	1.90
342915--342954	18	2.2	18	90	0	62	32	42	0	25	1.55
344519--344564	3	15.3	3	91	8	76	65	0	2	32	1.05
344523--344580	12	4.8	12	85	6	55	68	0	3	27	1.05
345805--347693	5	379.4	5	98	0	3551	58	20	0	20	1.44
347736--347810	26	2.7	27	81	8	89	48	4	1	46	1.29
347846--348087	38	6.5	37	84	7	285	40	9	3	46	1.54
347848--348087	75	3.2	73	88	5	313	40	10	3	46	1.54
348693--348775	42	2.0	42	90	0	130	28	24	25	21	1.99
348702--348794	42	2.2	42	80	3	107	29	27	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362772--362870	49	2.0	49	98	0	189	43	5	18	33	1.72
363499--363601	30	3.6	30	74	19	121	23	0	30	46	1.52
363520--363648	24	5.2	24	75	15	127	23	0	27	48	1.51
363479--363622	54	2.7	55	90	7	240	24	0	29	45	1.53
364269--364371	36	2.9	36	88	2	145	20	6	16	56	1.63
364305--364366	20	3.3	19	66	25	51	20	6	16	56	1.62
364665--364713	21	2.3	21	100	0	98	30	24	14	30	1.94
382690--382720	7	4.4	7	95	0	53	12	0	35	51	1.40
390948--391310	182	2.0	179	91	7	590	34	15	15	33	1.90
399933--399985	23	2.3	23	74	6	54	75	3	11	9	1.16
402831--403067	117	2.0	119	97	1	451	30	13	7	48	1.70
402845--403095	117	2.2	115	89	4	317	32	12	7	47	1.69
404069--404190	61	2.0	61	100	0	244	26	26	13	34	1.93
409640--409668	14	2.1	14	100	0	58	55	13	10	20	1.68
417798--417827	2	15.0	2	100	0	60	50	0	0	50	1.00
420870--420945	4	17.8	4	72	17	55	68	7	3	19	1.31
420963--421031	25	2.6	27	75	11	70	62	1	2	33	1.19
420963--421032	26	2.7	25	72	14	61	61	1	2	34	1.20
421293--421335	14	3.1	14	86	3	61	76	9	0	13	1.01
422627--422945	56	5.7	56	94	0	534	32	17	12	37	1.87
423089--423125	20	1.9	20	88	5	58	16	32	16	35	1.91
431800--431867	31	2.2	31	91	0	109	35	14	14	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434021--434093	31	2.4	31	81	6	85	41	15	19	24	1.89
434087--434142	28	2.0	29	85	3	78	35	17	7	39	1.78
435487--435535	20	2.5	19	83	6	53	30	16	22	30	1.96
437977--438103	61	2.1	61	82	2	148	16	22	35	25	1.95
438370--438419	14	3.8	13	80	12	57	30	4	8	58	1.45
438659--438718	31	1.9	31	93	0	102	40	6	10	43	1.64
439828--439951	23	5.3	23	79	2	140	30	21	21	25	1.98
439832--439951	47	2.6	47	94	1	206	30	22	22	25	1.99
439958--440175	103	2.1	103	96	0	400	37	23	13	25	1.91
445736--445860	23	5.3	23	77	2	115	29	22	22	25	1.99
445741--445860	47	2.6	47	91	1	197	29	22	23	25	1.99
445867--446084	103	2.1	103	93	0	373	36	23	13	25	1.92
447793--447854	31	2.0	31	100	0	124	29	16	29	25	1.96
448477--448593	12	9.3	13	70	19	79	52	0	0	47	1.06
448484--448593	13	8.9	12	70	20	84	51	0	0	47	1.06
448477--448611	63	2.1	63	93	4	227	53	1	0	45	1.09
448512--448610	20	4.8	20	72	18	69	53	2	0	44	1.12
453567--453614	11	4.1	11	82	15	60	6	0	47	45	1.27
454792--454905	41	2.7	42	76	11	135	31	16	22	28	1.96
454785--454996	82	2.6	82	80	2	237	29	14	21	33	1.93
455510--455555	22	2.1	22	87	0	65	43	4	13	39	1.63
456863--456961	42	2.4	42	81	3	101	23	16	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461387--461552	42	3.9	42	88	1	242	34	26	19	19	1.96
461386--461668	86	3.3	85	81	5	295	34	25	16	22	1.95
461388--461668	43	6.6	43	85	2	262	34	25	16	23	1.95
461386--461711	129	2.5	128	80	4	291	35	26	15	23	1.94
461520--461722	43	4.7	43	79	4	133	33	25	12	28	1.93
461430--461714	86	3.3	85	82	4	225	34	25	14	24	1.94
463813--464052	9	26.6	9	66	24	89	47	3	3	45	1.37
463818--464058	11	22.4	11	69	18	105	47	4	3	44	1.38
463813--463934	26	4.8	26	68	18	96	49	4	1	44	1.33
463818--464058	20	11.8	20	70	13	107	47	4	3	44	1.38

Tables:   1   2   3   4   5   6   7   8   9