genome.fa.s8803.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008803.1 Hibiscus syriacus cultivar Beakdansim tig00111954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1826237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1039 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158897--1158950	18	3.1	18	84	7	58	11	11	0	77	0.99
1160631--1160691	28	2.2	28	91	5	97	16	16	29	37	1.91
1179683--1179738	21	2.7	21	85	0	76	32	21	16	30	1.95
1188780--1188930	75	2.0	75	100	0	302	46	16	21	15	1.84
1193065--1193091	13	2.1	13	100	0	54	29	11	22	37	1.89
1197766--1197828	18	3.6	18	95	2	110	28	17	14	39	1.89
1199261--1199434	44	4.0	44	76	6	147	33	25	17	22	1.96
1199287--1199576	89	3.3	88	77	6	275	33	22	18	25	1.96
1199307--1199454	44	3.3	44	73	13	133	33	24	17	24	1.96
1200033--1200108	37	2.1	37	84	0	98	35	23	23	17	1.95
1200365--1200407	15	2.9	15	83	10	52	37	2	4	55	1.33
1200365--1200408	17	2.5	17	82	10	54	38	2	4	54	1.33
1200463--1200515	22	2.4	22	87	0	79	49	3	3	43	1.38
1200640--1200676	18	2.1	18	89	0	56	51	2	8	37	1.46
1200668--1200701	7	4.9	7	92	0	50	50	0	0	50	1.00
1201121--1201151	8	3.9	8	95	0	53	19	64	16	0	1.29
1201477--1201533	15	3.7	15	77	9	60	22	31	26	19	1.98
1201477--1201541	32	2.0	32	90	0	103	24	32	23	20	1.98
1207070--1207168	41	2.4	41	84	0	117	33	19	23	24	1.97
1207150--1207202	20	2.7	19	80	8	61	33	16	18	30	1.94
1207298--1207353	28	2.0	29	85	3	78	37	17	14	30	1.90
1209025--1209089	32	2.1	31	82	2	76	33	21	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1209670--1209764	2	48.0	2	95	2	174	48	0	1	50	1.07
1213354--1213399	21	2.1	22	84	11	60	71	0	17	10	1.13
1213418--1213460	12	3.5	12	78	6	50	18	2	39	39	1.64
1215822--1215879	20	2.6	23	76	10	59	29	20	22	27	1.99
1216685--1216749	31	2.1	31	82	5	78	23	20	21	35	1.96
1216724--1216807	30	2.8	30	85	0	114	16	16	30	35	1.92
1220065--1220114	25	2.0	24	88	3	73	26	2	38	34	1.68
1221562--1221588	13	2.1	13	100	0	54	22	25	14	37	1.93
1229340--1229752	205	2.0	202	95	4	713	33	17	12	36	1.87
1230696--1230738	21	2.0	22	86	4	61	41	23	11	23	1.87
1232431--1232506	40	1.9	40	88	0	116	31	18	17	32	1.94
1236893--1237154	44	5.9	45	86	3	350	29	18	10	41	1.84
1237615--1237670	22	2.7	20	76	10	67	30	28	12	28	1.93
1237616--1237838	94	2.4	95	81	7	258	30	26	14	27	1.95
1241616--1241671	3	19.0	3	89	10	89	32	0	0	67	0.91
1243417--1243824	197	2.1	200	95	3	745	32	16	10	40	1.83
1243811--1243849	16	2.4	16	86	4	51	28	5	2	64	1.28
1245155--1245207	25	2.0	26	89	7	81	26	13	5	54	1.60
1245171--1245222	14	3.8	14	79	2	52	25	15	7	51	1.69
1248363--1248428	1	66.0	1	72	0	51	86	7	4	1	0.76
1248363--1248425	26	2.4	26	84	10	85	85	7	4	1	0.78
1249566--1249612	23	2.0	23	100	0	94	38	29	14	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1253253--1253306	22	2.5	22	81	3	65	37	14	12	35	1.85
1253715--1254792	113	9.7	113	86	6	1295	38	13	20	28	1.90
1254187--1254249	20	3.2	20	62	20	51	41	9	23	25	1.85
1253699--1254792	328	3.3	325	88	5	1484	38	13	19	28	1.90
1254515--1254577	20	3.2	20	62	20	51	41	9	23	25	1.85
1254489--1254677	100	1.9	101	93	2	326	39	12	21	26	1.89
1254610--1254889	123	2.3	122	87	4	386	39	15	20	25	1.91
1255067--1255126	3	20.0	3	89	6	95	35	0	0	65	0.93
1255066--1255126	24	2.5	25	94	5	108	34	0	0	65	0.93
1262016--1262084	3	22.7	3	88	2	102	37	0	0	62	0.96
1263645--1263677	15	2.3	15	89	5	50	42	3	0	54	1.15
1266797--1266836	21	1.9	21	94	0	71	22	15	10	52	1.71
1274158--1274257	50	2.0	50	86	3	139	33	15	24	28	1.95
1275337--1275850	76	6.8	76	96	0	938	24	18	22	34	1.96
1276213--1276281	3	22.7	3	82	8	86	39	0	0	60	0.97
1277783--1277827	17	2.7	16	86	3	54	28	0	2	68	1.01
1277842--1277874	15	2.3	15	89	5	50	42	3	0	54	1.15
1285429--1285461	15	2.1	16	94	5	59	51	18	24	6	1.68
1292927--1292974	25	2.0	25	84	8	64	52	0	2	45	1.12
1294527--1294595	36	1.9	36	93	0	120	42	15	13	28	1.85
1297166--1297212	7	6.9	7	87	7	62	87	0	12	0	0.55
1297165--1297213	8	5.9	8	83	7	62	87	0	12	0	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1297164--1297197	11	3.2	11	91	4	52	91	0	8	0	0.43
1297164--1297204	19	2.2	19	95	4	75	90	0	9	0	0.46
1297160--1297204	18	2.6	18	85	3	65	86	0	13	0	0.57
1300801--1300857	22	2.6	22	97	0	105	33	15	14	36	1.88
1301570--1301823	73	3.5	73	92	2	429	30	15	12	40	1.85
1301823--1302278	123	3.7	123	93	0	777	37	16	21	24	1.93
1302623--1302664	3	14.0	3	84	0	57	30	0	0	69	0.89
1304197--1304235	2	19.5	2	89	10	62	48	0	2	48	1.15
1305983--1306015	17	1.9	17	88	11	50	6	21	0	72	1.05
1306613--1306658	20	2.3	20	96	0	83	17	19	15	47	1.82
1307413--1307456	2	22.0	2	100	0	88	50	0	0	50	1.00
1313390--1313475	44	2.0	44	88	0	127	30	25	18	25	1.98
1314032--1314162	54	2.4	54	82	6	158	29	22	17	30	1.97
1314146--1314216	20	3.5	20	79	11	74	28	25	14	32	1.94
1320174--1320223	21	2.4	21	86	0	64	42	28	8	22	1.81
1320776--1320893	53	2.2	53	83	8	143	28	19	19	32	1.96
1320906--1320960	21	2.6	21	100	0	110	32	23	16	27	1.96
1323287--1323326	21	2.0	20	85	5	53	25	12	20	42	1.86
1326896--1327291	77	5.2	75	80	8	419	36	9	17	35	1.83
1326900--1327291	154	2.6	152	83	5	465	36	9	17	35	1.83
1326896--1327333	228	1.9	228	81	8	525	36	9	16	36	1.81
1329193--1329357	82	2.0	84	85	7	230	36	10	8	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1329357--1329408	19	2.7	19	90	0	77	28	15	15	40	1.88
1329467--1329519	28	2.0	28	85	7	74	35	7	0	56	1.28
1329538--1329944	101	4.1	98	84	2	373	34	13	17	35	1.88
1330268--1330400	62	2.1	62	79	9	155	34	6	9	49	1.60
1333577--1333632	22	2.7	21	74	17	55	32	14	28	25	1.94
1333487--1333688	94	2.2	93	86	4	273	36	14	23	24	1.93
1340124--1340268	45	3.5	45	76	19	177	31	11	27	28	1.92
1340091--1340480	79	4.9	79	81	12	460	35	11	25	27	1.91
1340283--1340392	45	2.4	45	96	0	202	30	11	29	28	1.92
1340204--1340437	124	1.9	124	95	0	423	35	12	26	26	1.92
1340090--1340525	158	2.7	160	83	8	486	36	11	24	27	1.91
1340373--1340471	34	2.9	34	90	0	153	38	11	21	29	1.88
1340489--1340527	20	1.9	21	89	5	62	38	12	25	23	1.90
1345049--1345234	95	2.0	95	90	2	293	34	15	24	25	1.94
1345775--1345965	34	4.7	44	69	23	161	34	11	26	27	1.91
1345658--1345965	79	3.9	79	90	5	484	36	12	24	27	1.91
1349881--1349930	20	2.5	20	100	0	100	36	14	24	26	1.93
1349901--1350083	95	1.9	95	85	4	253	36	14	23	25	1.93
1362596--1362773	34	4.9	34	80	14	203	37	10	24	27	1.88
1366913--1366942	14	2.1	14	93	0	51	40	23	16	20	1.91
1367334--1367447	35	3.4	35	71	14	130	36	0	15	47	1.46
1367496--1367639	34	3.9	33	74	19	117	37	11	25	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1367607--1367874	45	6.5	44	75	18	270	35	11	24	29	1.90
1367495--1367685	79	2.5	77	92	1	310	36	12	25	26	1.91
1367530--1367809	124	2.3	124	91	1	438	35	11	24	27	1.91
1367697--1367909	34	5.6	34	69	21	138	37	10	22	30	1.88
1367652--1367924	79	3.5	79	92	0	447	36	11	23	28	1.90
1370835--1370860	11	2.4	11	100	0	52	57	7	0	34	1.27
1372048--1372102	25	2.2	25	93	0	92	32	14	16	36	1.89
1377794--1377898	46	2.3	46	91	3	169	30	22	7	39	1.82
1378003--1378124	40	3.0	40	96	0	226	34	26	15	23	1.95
1379160--1379195	14	2.6	14	95	0	63	19	16	19	44	1.87

Tables:   1   2   3   4   5   6   7   8   9