genome.fa.s8803.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008803.1 Hibiscus syriacus cultivar Beakdansim tig00111954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1826237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1039 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1714612--1714900	120	2.5	115	79	16	276	57	3	1	38	1.21
1721742--1721953	54	3.9	54	93	1	336	34	15	15	34	1.89
1728262--1728296	13	2.6	13	90	4	52	74	0	5	20	1.02
1728262--1728306	23	2.0	23	83	12	58	75	0	6	17	1.01
1728289--1728330	22	1.9	22	85	9	59	66	0	7	26	1.17
1729685--1729790	37	3.0	37	63	20	100	46	13	13	27	1.80
1729588--1729795	67	3.1	69	80	9	291	48	11	11	28	1.73
1729947--1729980	14	2.4	14	90	0	50	11	23	41	23	1.87
1730222--1730277	3	19.3	3	76	20	57	64	0	0	35	0.94
1730237--1730441	5	41.2	5	72	19	121	53	2	1	41	1.25
1730223--1730442	27	7.4	30	72	22	148	54	2	1	41	1.23
1730244--1730438	2	105.5	2	69	26	112	52	3	1	42	1.26
1730241--1730438	74	2.8	72	77	19	200	53	3	1	42	1.25
1736497--1736559	32	2.0	32	96	0	117	28	7	36	26	1.85
1739537--1739580	18	2.4	18	85	7	54	29	2	4	63	1.26
1740801--1740841	16	2.6	16	88	3	57	43	9	14	31	1.78
1740780--1740948	86	2.0	86	91	2	277	28	11	23	35	1.90
1751368--1751446	22	3.6	22	76	13	74	53	1	3	41	1.27
1751339--1751468	70	1.9	69	80	13	151	53	0	2	43	1.18
1751390--1751496	44	2.3	46	76	17	107	53	0	1	43	1.18
1755902--1755955	20	2.7	20	97	0	99	20	20	35	24	1.96
1755942--1756062	54	2.2	54	91	0	188	22	19	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1756626--1756689	27	2.4	27	82	7	69	59	15	1	23	1.45
1758594--1758673	21	3.8	20	79	12	81	32	15	27	25	1.95
1764419--1764541	54	2.3	54	91	0	192	24	17	25	32	1.97
1769632--1769672	21	2.0	21	90	0	64	24	7	41	26	1.81
1769758--1770138	41	9.2	41	77	6	340	37	18	18	26	1.93
1769758--1770058	84	3.6	81	83	5	316	37	17	17	26	1.93
1769758--1770038	125	2.2	124	86	3	375	38	18	17	25	1.92
1773895--1773934	14	2.8	15	88	7	57	25	7	27	40	1.82
1776319--1776465	61	2.4	61	79	6	138	60	8	12	17	1.57
1778005--1778042	19	2.0	19	94	0	67	28	21	18	31	1.97
1780021--1780109	46	1.9	46	97	0	169	41	2	4	51	1.34
1780032--1780109	26	3.2	26	65	26	71	44	2	5	47	1.38
1780201--1780243	20	2.2	19	83	4	50	55	6	0	37	1.27
1799208--1799448	92	2.5	94	84	9	276	50	10	14	24	1.75
1800098--1800146	22	2.2	22	85	7	64	34	28	20	16	1.94
1800386--1800428	14	3.0	14	86	10	52	46	2	0	51	1.13
1802804--1802848	22	2.0	23	86	4	65	62	11	2	24	1.40
1804914--1804950	2	18.5	2	100	0	74	51	0	0	48	1.00
1805111--1805158	13	3.7	13	85	0	69	31	20	20	27	1.98
1805579--1805632	23	2.3	23	83	0	63	33	27	16	22	1.95
1805725--1805775	20	2.5	20	87	0	66	58	17	9	13	1.61
1805737--1805778	20	2.1	20	95	0	75	59	19	11	9	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1808090--1808136	2	23.5	2	100	0	94	48	0	0	51	1.00
1808361--1808573	6	36.5	6	72	9	109	7	4	41	46	1.53
1808390--1808492	41	2.5	41	79	4	109	8	2	41	46	1.50
1808524--1808591	34	2.0	34	88	0	100	8	4	44	42	1.55
1808755--1809067	101	2.9	109	84	12	434	35	5	28	30	1.80
1809143--1809185	19	2.3	19	84	8	52	69	4	13	11	1.33
1809279--1809415	61	2.2	61	83	10	190	35	9	5	48	1.60
1812318--1812400	33	2.5	35	84	5	100	42	7	7	43	1.60
1812358--1812508	50	2.8	54	78	15	186	41	7	9	41	1.65
1812449--1812626	18	10.2	18	71	15	142	43	5	6	44	1.52
1812460--1812624	35	4.7	35	84	7	203	44	5	6	44	1.52
1812461--1812773	35	8.9	35	71	17	138	43	4	6	45	1.50
1812356--1812672	108	3.0	103	78	12	258	43	5	7	42	1.57
1812709--1812786	2	37.0	2	82	14	95	48	1	5	44	1.32
1812687--1812840	25	6.3	23	77	19	111	46	2	7	44	1.44
1812709--1812861	24	5.8	26	75	18	106	46	1	7	44	1.42
1812709--1812846	45	3.0	44	76	16	120	47	2	6	44	1.41
1812707--1812858	18	8.1	18	74	19	80	46	1	6	44	1.40
1812856--1812964	18	5.6	18	75	19	94	40	7	10	42	1.66
1812856--1812981	42	3.1	42	80	13	163	42	8	8	40	1.67
1812854--1812971	38	3.0	39	80	12	141	41	7	9	41	1.66
1812987--1813070	33	2.6	33	87	5	120	39	5	8	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812990--1813075	20	4.8	19	64	27	62	40	5	8	45	1.58
1813060--1813161	23	4.2	24	68	30	74	51	0	6	40	1.35
1813047--1813163	39	3.1	38	79	13	127	51	2	6	39	1.42
1813193--1813242	21	2.4	21	83	12	59	46	8	2	44	1.44
1813237--1813281	23	1.9	24	86	13	67	42	4	0	53	1.21
1813284--1813484	18	10.2	20	79	11	66	45	2	4	47	1.36
1813300--1813486	12	16.9	10	73	21	71	45	2	3	47	1.34
1813294--1813486	11	17.4	11	76	12	94	45	2	4	47	1.35
1813360--1813487	2	62.5	2	86	7	177	47	1	2	48	1.24
1813337--1813387	20	2.6	20	87	3	77	41	3	9	45	1.56
1813563--1814261	210	3.3	216	95	2	1216	28	12	8	50	1.69
1821621--1821685	18	3.6	18	89	6	87	72	3	3	21	1.12
1823273--1823310	16	2.4	16	100	0	76	26	13	0	60	1.33

Tables:   1   2   3   4   5   6   7   8   9

The End!