genome.fa.s8826.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008826.1 Hibiscus syriacus cultivar Beakdansim tig00112000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3884024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2089 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3844168--3844493	66	4.9	66	91	0	508	32	17	13	36	1.89
3846983--3847034	15	3.5	15	91	0	77	32	30	1	34	1.69
3847811--3848264	226	2.0	226	91	1	732	33	15	14	37	1.88
3849011--3849051	17	2.4	17	95	0	73	17	19	36	26	1.94
3853446--3853486	3	13.7	3	94	0	73	63	0	2	34	1.08
3856304--3856461	21	7.8	20	70	7	77	37	24	17	19	1.93
3856429--3856622	20	9.6	20	76	8	76	35	25	19	19	1.95
3856429--3856622	40	4.8	39	82	3	199	35	25	19	19	1.95
3856429--3856621	60	3.2	60	83	0	251	35	25	19	19	1.95
3857002--3857072	33	2.2	33	92	0	115	11	22	18	47	1.80
3857193--3857247	14	3.6	14	73	21	56	41	23	25	9	1.83
3857193--3857263	33	2.2	33	94	0	124	43	25	22	8	1.81
3857259--3857356	19	5.7	19	70	22	81	10	24	22	42	1.84
3857281--3857370	14	5.7	14	74	23	81	8	25	23	42	1.83
3857264--3857378	33	3.5	33	95	0	212	9	24	20	45	1.81
3859077--3859454	92	4.1	93	98	1	726	22	12	18	46	1.83
3859498--3859625	19	7.3	18	73	19	110	45	28	17	8	1.78
3859532--3859625	33	2.9	32	92	4	152	45	28	18	7	1.76
3859621--3859755	19	7.6	19	75	16	128	11	19	23	45	1.82
3859643--3859699	14	3.7	14	77	20	60	10	21	22	45	1.82
3859626--3859718	33	2.8	33	95	0	168	10	20	21	47	1.80
3861650--3861685	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3861824--3861873	20	2.6	19	93	6	84	42	18	24	16	1.89
3861880--3862147	52	5.0	52	93	4	446	14	22	16	46	1.83
3861880--3862175	33	8.5	35	83	14	230	14	21	17	46	1.83
3861902--3862175	19	15.4	19	81	15	345	13	21	17	47	1.83
3861880--3862147	109	2.5	105	91	6	450	14	22	16	46	1.83
3864652--3864697	24	2.0	23	87	12	67	36	21	15	26	1.93
3865371--3865755	20	19.2	20	84	5	456	20	18	25	35	1.95
3868614--3868653	21	1.9	21	85	10	55	15	10	35	40	1.80
3869007--3869064	30	2.0	29	90	10	91	46	15	5	32	1.68
3869007--3869066	29	2.0	30	93	6	104	45	15	6	33	1.72
3870338--3870385	19	2.5	20	82	3	62	29	12	6	52	1.63
3871751--3871793	21	2.0	21	86	0	59	30	27	25	16	1.97
3871773--3871922	67	2.2	67	87	4	205	26	26	28	18	1.98
3872223--3872293	29	2.5	29	90	2	108	36	11	12	39	1.79
3872308--3872366	30	1.9	31	86	3	84	37	6	22	33	1.80
3872585--3872651	22	3.0	22	100	0	134	19	26	26	26	1.99
3878632--3878673	21	2.0	21	85	0	57	28	28	26	16	1.97
3878654--3878802	66	2.3	66	88	4	212	26	27	27	18	1.98
3879098--3879173	28	2.6	28	85	10	100	38	11	13	36	1.81
3879457--3879523	22	3.0	22	100	0	134	19	26	26	26	1.99
3880721--3880780	20	2.9	21	80	5	77	28	28	21	21	1.99
3880960--3881019	29	2.0	31	84	12	81	45	16	6	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3881301--3881341	20	2.0	21	85	9	57	17	7	34	41	1.77
3881415--3881452	19	2.0	19	89	0	58	39	23	18	18	1.92
3881897--3881967	13	5.9	12	81	17	69	71	1	8	18	1.18
3881880--3881954	18	4.3	18	77	13	84	70	1	8	20	1.19
3882313--3882381	36	1.9	36	96	0	129	26	21	18	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!