genome.fa.s8826.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008826.1 Hibiscus syriacus cultivar Beakdansim tig00112000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3884024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2089 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214163--214234	20	3.6	20	96	0	135	31	15	27	25	1.95
214163--214261	40	2.5	40	85	6	121	31	18	25	25	1.97
214988--215054	22	3.0	22	95	2	116	25	28	26	19	1.99
219773--219839	22	3.0	22	95	2	116	25	28	26	19	1.99
234435--234472	10	3.8	10	85	0	58	5	13	23	57	1.56
234435--234475	20	2.0	20	100	0	82	4	14	24	56	1.58
236572--236680	14	7.6	14	69	10	58	26	12	3	56	1.53
236570--236669	29	3.4	30	78	5	107	25	15	4	56	1.56
238840--238866	2	13.5	2	100	0	54	0	0	48	51	1.00
251022--251063	22	1.9	22	85	0	57	45	11	4	38	1.62
255059--255137	22	3.6	22	71	8	63	36	12	1	49	1.49
255100--255142	22	2.0	22	86	9	61	34	6	2	55	1.39
255219--255264	24	1.9	24	86	8	67	52	2	10	34	1.49
255636--256456	6	138.2	6	91	4	1238	50	29	0	20	1.50
256521--257580	2	530.0	2	66	19	364	44	5	3	46	1.42
257409--257433	13	1.9	13	100	0	50	40	4	8	48	1.51
257688--257743	3	18.7	3	81	7	69	35	1	0	62	1.06
261422--261563	55	2.6	55	89	2	214	40	14	25	20	1.90
264205--264270	27	2.5	26	78	11	71	36	6	10	46	1.63
264901--264940	1	40.0	1	89	0	62	95	2	2	0	0.34
264901--264940	16	2.5	16	95	0	71	95	2	2	0	0.34
265976--266049	32	2.3	32	85	0	94	35	12	24	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266275--266403	43	3.0	43	81	0	141	31	29	18	20	1.97
266615--266695	41	2.0	41	80	4	92	23	23	23	29	1.99
266709--267174	133	3.5	133	89	0	718	31	22	18	27	1.97
267073--267411	112	3.0	110	91	2	516	30	23	17	28	1.97
267610--267658	3	16.7	3	79	12	57	34	2	0	63	1.06
275639--275800	54	3.0	54	95	0	281	36	18	17	27	1.93
276890--276940	25	2.1	24	81	3	57	49	13	0	37	1.43
282753--282804	23	2.3	23	75	0	59	32	25	3	38	1.74
288925--289032	52	2.1	52	92	0	180	27	30	2	38	1.71
291530--291572	20	2.2	20	91	0	68	32	13	20	32	1.92
293792--294084	54	5.4	54	84	4	344	27	16	20	35	1.94
298182--298640	54	8.5	54	85	1	555	27	15	19	37	1.92
301821--301985	54	3.1	54	91	2	262	35	16	16	30	1.92
303787--303849	22	2.9	22	92	0	108	49	9	4	36	1.57
312000--312044	18	2.4	18	88	3	72	15	13	0	71	1.15
313779--313828	3	16.7	3	100	0	100	66	0	0	34	0.92
319126--319150	4	6.2	4	100	0	50	28	0	0	72	0.86
323102--323902	261	3.1	256	81	5	864	33	14	15	36	1.88
325671--325705	15	2.2	16	95	5	63	77	0	5	17	0.96
325670--325706	16	2.3	17	86	13	60	78	0	5	16	0.93
325670--325760	41	2.3	39	82	16	116	71	0	12	16	1.14
325712--325784	5	13.8	5	72	21	51	73	1	9	15	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325712--325784	11	6.9	10	71	18	51	73	1	9	15	1.14
325712--325745	16	2.1	16	100	0	68	76	0	5	17	0.98
325903--325946	9	4.8	9	91	5	61	75	0	0	25	0.81
325902--325944	19	2.3	19	91	0	68	76	0	0	23	0.78
328722--328784	6	10.7	6	85	8	69	0	20	0	79	0.73
328722--328790	25	3.0	24	83	10	81	1	20	0	78	0.83
340807--340831	13	1.9	13	100	0	50	40	0	20	40	1.52
341354--341393	19	2.1	19	100	0	80	37	15	10	37	1.80
342026--342068	20	2.2	20	86	0	59	18	4	18	58	1.56
342080--342172	46	2.0	45	89	6	143	38	7	21	32	1.81
354305--354537	123	1.9	122	80	8	276	41	3	7	48	1.46
358552--358613	21	3.0	21	90	0	97	58	0	6	35	1.24
358546--358603	21	2.5	24	81	16	86	63	0	5	31	1.16
367867--367912	20	2.4	21	79	17	55	23	23	19	32	1.97
368947--368975	14	2.0	15	93	6	51	55	31	0	13	1.39
375640--375748	51	2.1	52	81	8	125	57	6	12	22	1.58
377226--377426	58	3.4	58	81	0	222	28	16	26	27	1.97
377461--377567	42	2.6	41	83	4	117	31	22	18	27	1.97
377289--377853	286	2.0	284	85	4	764	32	18	23	25	1.97
379337--379393	28	2.0	28	82	0	69	22	3	33	40	1.71
379347--379400	28	1.9	28	84	0	72	25	1	31	40	1.66
379870--379951	4	21.8	4	79	14	77	1	18	1	79	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379870--379951	7	10.9	8	77	13	77	1	18	1	79	0.87
379869--379954	40	2.2	40	83	8	104	1	18	1	79	0.87
381316--381352	13	2.6	15	79	16	51	45	10	29	13	1.77
383755--383826	26	2.8	25	81	12	83	75	8	4	12	1.18
383853--383983	51	2.6	51	80	7	142	58	6	10	25	1.55
384063--384127	33	2.0	32	82	8	78	58	6	9	26	1.52
394043--394095	22	2.4	22	90	0	88	35	18	22	22	1.95
395053--395134	21	3.9	21	78	0	92	29	20	18	31	1.96
395106--395148	21	2.0	21	81	0	50	30	23	18	27	1.98
396757--396842	43	2.0	43	100	0	172	41	2	11	44	1.53
403668--403715	13	3.7	13	82	0	60	68	12	2	16	1.29
403668--403717	26	1.9	26	91	0	82	66	12	4	18	1.39
404134--404199	32	2.1	32	88	0	96	21	15	43	19	1.87
407585--407619	14	2.5	14	90	0	52	37	2	8	51	1.47
410575--410622	24	2.1	23	85	11	64	37	12	37	12	1.81
413232--413256	2	12.5	2	100	0	50	52	0	0	48	1.00
413313--413385	36	2.0	36	94	0	128	15	36	15	32	1.88
416059--416101	20	2.1	21	87	8	63	53	2	18	25	1.56
420570--420618	23	2.1	23	85	7	64	26	2	14	57	1.48
442417--442447	11	2.8	11	95	0	53	64	9	9	16	1.48
443745--443825	33	2.5	33	87	4	110	29	14	18	37	1.91
443761--443826	33	2.0	33	93	0	114	30	12	18	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453401--453493	39	2.5	35	79	6	96	49	0	12	37	1.41
455138--455247	56	2.0	55	84	12	145	45	2	8	43	1.48
455138--455241	54	1.9	54	86	7	149	45	2	8	43	1.49
455223--455313	28	3.3	28	93	3	150	46	1	6	46	1.36
455289--455364	37	2.1	36	87	7	109	46	1	6	46	1.37
455223--455328	28	3.9	26	92	4	133	45	1	6	46	1.40
455249--455411	63	2.6	65	87	10	241	44	2	6	46	1.43
455316--455376	26	2.3	26	91	5	97	44	0	8	47	1.33
455321--455393	29	2.6	28	79	16	80	46	1	5	46	1.34
467170--467204	15	2.4	14	86	9	52	65	11	0	22	1.24
470933--471001	30	2.3	31	82	2	86	30	24	13	31	1.93
472272--472339	31	2.2	31	78	5	75	33	11	27	26	1.91
484634--484674	19	2.2	20	86	8	59	58	17	9	14	1.62
484979--485003	2	12.5	2	100	0	50	52	0	0	48	1.00
486412--486458	16	2.8	17	77	9	51	29	2	2	65	1.15
493506--493544	10	3.9	10	86	0	51	28	38	28	5	1.78
493844--493898	22	2.5	22	75	0	56	29	9	23	38	1.85
494546--494591	24	1.9	25	82	8	60	15	6	4	73	1.19
494587--494645	29	2.1	28	83	3	73	10	11	0	77	0.98
494638--494662	11	2.3	11	100	0	50	36	0	0	64	0.94
495213--495288	33	2.3	33	90	0	116	23	27	6	42	1.79
496250--496315	28	2.4	28	92	0	105	36	9	16	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503743--504021	91	3.1	90	86	3	396	34	14	13	38	1.85
503743--504022	92	3.1	91	86	3	400	33	14	13	38	1.85
504884--504926	22	2.0	22	95	0	77	27	20	11	39	1.88
504737--504912	83	2.1	81	90	2	280	28	23	13	34	1.92
504886--504939	22	2.5	22	87	0	72	29	20	7	42	1.79
504798--505020	103	2.1	104	92	1	376	28	23	12	36	1.90
504903--505081	81	2.2	81	93	0	304	29	22	12	36	1.90
510680--510895	82	2.7	81	87	1	297	30	21	10	37	1.87
512169--512391	56	4.0	56	83	5	285	39	10	14	35	1.81
512172--512402	110	2.1	113	85	7	330	39	11	15	34	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18