genome.fa.s8826.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008826.1 Hibiscus syriacus cultivar Beakdansim tig00112000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3884024

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2089 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729395--729483	43	2.1	43	97	0	169	37	19	11	32	1.87
733733--733782	24	2.1	24	92	7	84	26	14	30	30	1.94
760697--760770	2	37.0	2	97	0	139	48	0	1	50	1.09
762822--762859	20	1.9	20	88	0	58	21	26	10	42	1.85
765347--765423	20	3.8	20	75	14	70	31	18	11	38	1.86
767314--767379	27	2.5	27	73	11	64	48	1	0	50	1.10
767989--768277	155	1.9	155	88	3	447	27	15	6	49	1.70
770813--770887	20	3.7	20	71	16	64	30	16	18	34	1.93
775621--775654	18	1.9	17	88	5	50	17	0	2	79	0.86
776954--777023	19	3.7	19	73	7	63	68	0	7	24	1.14
776960--777027	27	2.5	28	75	18	70	70	0	7	22	1.11
777050--777091	17	2.4	18	92	4	68	71	0	7	21	1.09
777837--777871	13	2.6	13	90	4	52	65	2	5	25	1.28
777658--777844	76	2.6	76	87	6	246	56	12	0	30	1.41
779707--779817	5	21.8	5	77	7	107	72	0	5	21	1.11
785439--785480	17	2.4	18	92	4	68	71	0	7	21	1.09
786125--786233	19	5.8	19	66	10	55	56	14	0	27	1.44
786056--786239	74	2.6	71	87	5	237	55	14	0	29	1.43
796283--796320	20	1.9	20	88	0	58	34	13	23	28	1.92
797633--797659	2	13.5	2	100	0	54	48	0	0	51	1.00
797788--797966	81	2.2	80	80	1	241	30	20	13	35	1.92
798390--798871	26	20.0	26	70	20	306	20	23	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798358--798871	46	11.3	46	79	13	334	20	23	10	44	1.83
798455--798768	118	2.7	116	86	9	396	20	24	10	44	1.83
798468--798660	20	8.7	20	73	19	152	20	25	9	44	1.82
798601--798838	72	3.2	72	81	11	316	20	23	11	44	1.84
798729--798802	34	2.2	34	92	0	121	20	20	12	47	1.81
798683--798848	80	2.1	80	88	2	244	21	22	12	44	1.84
798819--798858	20	2.0	21	85	5	55	17	30	12	40	1.86
799271--799310	20	2.2	18	86	13	55	35	22	10	32	1.87
799289--799381	42	2.3	41	84	3	116	32	24	8	34	1.86
802441--802483	20	2.2	20	95	0	77	37	18	11	32	1.87
810920--810962	20	2.2	20	91	0	68	34	20	11	32	1.89
819474--819618	76	1.9	78	82	5	188	44	7	4	43	1.51
826332--826476	77	1.8	79	81	10	181	40	11	4	43	1.61
837066--837096	2	15.5	2	100	0	62	51	0	0	48	1.00
838954--839057	53	1.9	54	88	1	156	32	15	12	39	1.85
850353--850392	21	2.0	21	95	5	73	30	27	17	25	1.97
851089--851118	15	2.1	15	93	6	53	56	0	33	10	1.32
864803--864894	30	3.0	30	69	12	80	38	20	13	28	1.90
864823--864893	31	2.3	31	78	2	81	40	18	12	28	1.87
869406--869479	30	2.4	31	84	2	96	37	20	9	32	1.85
869406--869496	31	3.0	31	83	4	105	39	18	12	29	1.87
876728--877248	128	4.0	128	75	13	463	48	8	18	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
876729--877248	42	11.9	43	76	15	347	48	8	18	24	1.75
876729--877202	88	5.4	85	76	14	387	48	8	18	24	1.75
877010--877195	96	1.9	97	90	5	297	47	8	21	22	1.76
877113--877248	40	3.2	43	83	10	156	50	6	19	22	1.71
877312--877383	28	2.6	28	97	0	135	45	11	22	20	1.82
878787--878943	38	4.2	37	84	8	203	45	8	2	43	1.49
878787--878943	73	2.1	75	88	4	230	45	8	2	43	1.49
881741--881837	42	2.3	42	100	0	194	27	14	14	43	1.84
894931--895029	42	2.4	42	89	0	153	23	30	9	37	1.86
895144--895434	159	1.8	159	81	6	363	25	23	18	32	1.97
901611--901694	29	2.9	29	96	0	150	40	21	13	25	1.89
902347--902459	4	29.0	4	71	21	55	4	17	0	77	0.92
902394--902456	6	10.5	6	77	16	60	1	17	0	80	0.78
902367--902459	10	9.0	10	75	15	82	3	16	0	80	0.83
902367--902459	14	6.7	15	75	16	85	3	16	0	80	0.83
902367--902459	42	2.2	42	87	9	129	3	16	0	80	0.83
904141--904270	47	2.9	45	84	9	160	33	19	6	40	1.78
915188--915218	15	2.1	15	100	0	62	48	19	25	6	1.72
925467--925504	19	2.0	20	89	5	60	21	13	21	44	1.85
926803--926967	62	2.7	62	88	1	233	33	22	16	27	1.95
927140--927426	136	2.1	138	83	5	359	37	11	10	40	1.75
930519--930664	73	2.0	74	87	1	213	34	12	7	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930771--931253	200	2.4	200	82	4	600	33	20	11	34	1.88
931758--931819	23	2.7	22	82	9	63	66	1	3	29	1.17
932562--932600	19	1.9	19	85	10	51	53	5	7	33	1.51
936581--936641	16	3.8	16	91	0	104	55	21	13	9	1.66
939023--939053	16	2.0	15	93	6	53	64	16	6	12	1.47
939114--939204	10	10.7	10	65	32	61	57	19	12	10	1.64
939120--939199	16	5.0	16	93	0	133	56	20	12	11	1.66
940674--940835	81	2.0	80	93	1	279	35	17	12	33	1.89
941484--941514	2	15.5	2	100	0	62	51	0	0	48	1.00
946529--946556	11	2.5	11	100	0	56	35	0	39	25	1.56
946928--946994	31	2.2	31	88	0	98	26	10	25	37	1.88
946990--947103	33	3.4	33	88	1	165	13	11	34	41	1.80
947684--947731	16	2.8	18	90	6	73	29	31	6	33	1.82
954402--954459	21	2.8	21	86	0	89	25	13	18	41	1.88
955849--955896	19	2.5	20	86	3	62	29	14	6	50	1.67
963765--963813	23	2.1	23	88	0	71	38	8	22	30	1.83
964303--964950	182	3.6	180	85	3	834	28	16	12	42	1.84
966811--966848	20	1.9	20	89	10	60	57	5	0	36	1.21
968380--968412	16	1.9	18	88	11	52	51	3	6	39	1.42
968724--968767	21	2.0	21	82	8	52	47	0	2	50	1.13
969101--969159	22	2.9	22	83	16	67	66	3	0	30	1.08
969103--969221	37	3.3	34	73	18	91	66	4	2	26	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970012--970036	13	1.9	13	100	0	50	0	8	0	92	0.40
970527--970605	3	27.0	3	83	10	101	69	0	0	30	0.89
970528--970595	23	3.0	23	91	4	102	70	0	0	29	0.87
970528--970608	23	3.5	23	85	9	94	71	0	0	28	0.86
970973--971306	123	2.7	122	85	4	467	25	18	14	41	1.89
971226--971425	106	1.9	106	90	3	323	27	21	13	38	1.90
971793--971869	22	3.5	22	85	1	102	41	10	12	35	1.78
972489--972541	22	2.5	21	88	8	81	58	0	13	28	1.35
980146--980177	15	2.1	15	94	0	55	46	9	18	25	1.79
983089--983152	26	2.5	25	73	12	58	60	0	9	29	1.28
984040--984092	23	2.3	22	81	18	63	66	5	0	28	1.15
985469--985543	3	25.0	3	81	8	82	64	0	1	34	1.02
985491--985543	16	3.3	15	82	10	61	66	0	1	32	1.03
986320--986440	50	2.4	50	84	1	152	16	33	30	19	1.94
989278--989318	21	2.0	21	85	0	55	12	34	19	34	1.89
991180--991391	110	1.9	111	95	0	381	47	9	8	35	1.65
991524--991563	10	3.8	11	87	12	50	42	0	25	32	1.55
991673--991799	51	2.5	51	88	1	184	16	31	35	16	1.91
993048--993086	14	2.8	14	88	0	60	74	0	0	25	0.82
994659--994863	100	2.0	100	100	0	410	36	14	24	24	1.93
995018--995297	112	2.4	114	86	8	397	39	5	5	50	1.47
999139--999232	45	2.0	45	85	8	125	17	14	30	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001285--1001330	2	23.0	2	86	0	65	52	4	0	43	1.21
1005367--1005403	17	2.1	18	90	5	58	62	0	0	37	0.96
1005956--1006065	57	1.9	57	82	14	136	30	16	5	47	1.69
1007016--1007045	15	2.0	15	93	0	51	30	16	20	33	1.94
1011748--1011807	29	2.1	29	84	6	77	16	26	36	20	1.93
1011797--1011915	60	2.0	60	98	0	229	12	22	41	23	1.88
1011964--1012026	29	2.2	29	91	5	101	22	30	28	19	1.98
1011972--1012033	29	2.1	29	85	5	81	25	27	29	17	1.98
1012108--1012141	11	3.0	11	83	8	50	23	20	17	38	1.93
1012452--1012509	27	2.1	28	81	15	68	32	3	13	50	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18