genome.fa.s8914.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008914.1 Hibiscus syriacus cultivar Beakdansim tig00112217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601432

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 853 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166422--166456	17	2.1	17	94	0	61	25	5	28	40	1.78
166893--166925	8	4.1	8	92	0	57	84	0	15	0	0.61
185948--185993	20	2.3	20	80	0	56	45	4	2	47	1.34
193966--194025	29	2.1	29	100	0	120	50	10	3	36	1.53
193970--194032	29	2.2	29	94	0	108	42	12	1	42	1.52
195487--195521	18	1.9	18	100	0	70	31	28	22	17	1.96
196329--196386	20	2.7	20	86	10	71	24	22	24	29	1.99
196374--196513	63	2.2	62	79	10	142	27	21	17	33	1.96
200379--200416	20	1.9	20	88	0	58	23	23	21	31	1.98
200424--200563	63	2.2	62	80	10	151	27	22	17	32	1.96
200546--200606	21	2.9	21	97	2	113	34	19	24	21	1.96
201904--202059	65	2.4	65	90	3	235	29	23	16	30	1.96
203999--204038	21	1.9	21	85	10	55	52	0	10	37	1.35
222079--224118	106	19.3	106	93	0	3223	23	18	24	33	1.97
231738--231767	15	2.0	15	93	0	51	53	6	3	36	1.44
232981--233059	3	26.3	3	80	5	88	59	0	0	40	0.97
234300--234356	28	2.0	28	86	0	78	33	15	15	35	1.90
238853--238881	2	14.5	2	100	0	58	48	0	0	51	1.00
240795--240831	17	2.2	17	90	4	58	59	2	2	35	1.26
241729--241769	16	2.6	16	88	3	66	36	17	4	41	1.71
251182--251231	4	13.0	4	79	8	59	70	2	0	28	0.99
251178--251229	15	3.5	15	80	12	63	71	1	0	26	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251186--251236	23	2.1	26	89	10	81	70	3	0	25	1.04
251211--251280	36	1.9	36	82	5	88	74	1	8	15	1.13
251263--251327	24	2.7	24	86	11	80	75	1	9	13	1.11
251312--251378	34	1.9	35	77	17	68	71	4	8	14	1.27
251225--251332	24	5.0	21	68	16	53	75	1	10	12	1.14
251655--251708	20	2.7	19	80	2	63	27	42	11	18	1.84
252505--252536	4	8.0	4	100	0	64	75	0	0	25	0.81
252538--252584	3	16.0	3	95	4	87	68	0	0	31	0.90
252619--252979	147	2.5	144	84	8	439	44	6	3	45	1.47
252925--252974	26	1.9	26	88	8	75	48	8	0	44	1.32
252586--252986	37	11.1	36	83	7	419	45	6	3	45	1.45
254704--254769	28	2.4	28	100	0	132	46	0	6	46	1.27
254704--254786	28	3.0	28	91	3	96	48	0	8	43	1.33
255124--255202	3	26.3	3	87	12	94	30	0	0	69	0.89
255256--255324	33	2.1	33	88	0	102	46	18	7	27	1.75
258746--258784	18	2.2	18	86	4	53	12	20	46	20	1.83
258757--258803	23	2.0	23	95	0	85	8	19	53	19	1.70
258760--258814	23	2.4	23	87	6	76	12	20	45	21	1.84
266112--266214	29	3.6	29	86	0	125	43	21	7	27	1.79
266235--266279	13	3.5	13	93	0	72	17	24	44	13	1.85
269563--269665	43	2.4	43	98	0	197	39	26	17	16	1.90
269606--269865	109	2.4	111	91	1	407	35	25	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270646--270802	37	4.3	36	84	6	210	24	18	15	42	1.89
270646--270802	73	2.2	73	87	3	228	24	18	15	42	1.89
270832--271060	85	2.7	84	90	2	343	27	27	19	25	1.99
271619--271666	3	17.3	3	76	23	52	29	0	0	70	0.87
271720--271803	33	2.5	33	88	3	125	40	21	13	25	1.89
273044--273269	113	1.9	118	83	6	291	52	5	12	29	1.62
275001--275227	100	2.2	105	88	8	333	50	3	1	44	1.27
275635--275676	3	14.0	3	85	9	59	33	2	0	64	1.07
275637--275684	10	4.8	10	80	7	53	33	2	0	64	1.05
277335--277377	22	2.0	22	100	0	86	27	4	6	60	1.43
277456--277505	26	2.0	24	84	7	64	36	4	6	54	1.44
279108--279476	106	3.5	106	89	0	549	34	24	18	22	1.96
279914--279981	33	2.1	33	91	0	109	23	22	14	39	1.91
282706--282769	17	3.4	17	70	25	56	42	3	0	54	1.16
282697--282769	21	3.5	21	80	12	96	42	2	0	54	1.14
282694--282752	22	2.6	23	78	10	68	44	1	0	54	1.10
282783--282825	19	2.3	19	92	8	70	27	0	0	72	0.85
284239--284274	9	4.0	9	88	0	54	55	0	0	44	0.99
285546--285617	35	2.1	35	94	0	126	38	20	13	26	1.90
287348--287391	20	2.2	21	88	8	65	22	9	4	63	1.42
293583--293625	20	2.2	19	87	4	59	67	20	2	9	1.30
293590--293628	19	2.0	19	95	5	69	64	25	0	10	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297134--297176	18	2.2	20	92	8	72	44	0	0	55	0.99
299040--299068	14	2.1	14	100	0	58	65	0	6	27	1.18
300909--302222	106	12.4	106	92	0	2042	23	18	24	33	1.97
302413--302925	257	2.0	257	97	0	963	30	19	19	30	1.97
306404--306432	14	2.1	14	100	0	58	65	0	6	27	1.18
313848--313922	35	2.1	35	92	0	123	44	22	0	33	1.53
313917--313993	34	2.2	34	83	2	100	40	1	16	41	1.57
319763--319867	54	1.9	54	92	0	174	27	12	20	40	1.88
322284--322466	42	4.4	42	79	2	163	31	19	21	27	1.98
323891--324082	104	1.8	104	85	3	260	18	18	3	59	1.52
338160--338688	55	9.9	52	83	5	446	29	25	16	28	1.97
338208--338688	110	4.5	107	82	7	504	29	25	16	29	1.96
338690--338797	36	3.0	36	84	2	144	23	22	16	37	1.93
338692--338800	37	3.0	36	86	1	137	22	22	17	37	1.94
340121--340154	15	2.2	16	89	5	52	0	14	2	82	0.79
340121--340199	28	2.8	27	76	19	74	3	18	1	75	1.02
340143--340192	17	2.6	18	84	15	57	6	18	2	74	1.12
340095--340195	19	5.3	19	67	27	63	5	19	0	73	1.10
340218--340255	15	2.5	15	86	4	58	10	13	0	76	1.02
349913--350016	47	2.2	45	81	9	127	42	20	11	25	1.86
360504--360563	26	2.3	26	100	0	120	21	13	16	48	1.80
362307--362343	18	2.1	18	94	0	65	40	32	27	0	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362951--363297	41	8.4	41	80	6	299	27	19	19	32	1.96
367694--367752	21	2.8	21	84	0	73	25	1	18	54	1.53
377394--377430	15	2.5	15	95	0	65	5	16	70	8	1.30
378520--378576	27	2.2	26	82	14	66	49	1	0	49	1.11
378746--378791	24	1.9	23	83	16	58	50	0	2	47	1.13
380355--380381	12	2.2	12	100	0	54	51	7	11	29	1.64
396373--396414	22	1.9	22	90	0	66	33	16	21	28	1.95
397799--397833	16	2.2	16	100	0	70	40	37	5	17	1.73
399991--400054	25	2.6	25	100	0	128	26	7	9	56	1.58
400727--400760	17	2.0	17	94	0	59	67	0	0	32	0.91
402365--402415	25	2.0	27	88	7	79	25	5	7	60	1.47
404052--404104	2	26.5	2	100	0	106	50	0	0	49	1.00
414893--414945	21	2.5	21	75	6	63	20	24	18	35	1.95
414935--414986	21	2.5	21	87	3	70	38	17	23	21	1.93
414975--415109	20	6.7	20	83	5	137	31	25	18	23	1.97
414972--415084	41	2.8	42	87	4	151	31	26	18	23	1.97
415265--415296	12	2.8	12	95	4	57	15	37	6	40	1.73
415851--415904	24	2.2	24	86	0	72	24	16	18	40	1.90
418866--418948	42	2.0	42	83	9	107	21	16	37	24	1.94
418863--418932	21	3.3	21	66	4	52	20	18	35	25	1.95
419333--419408	19	3.9	19	84	3	98	48	21	18	11	1.79
419495--419776	94	3.1	93	94	3	482	46	19	12	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421454--421594	33	3.9	38	79	15	140	44	19	22	12	1.85
421463--421552	20	4.9	19	76	16	91	41	22	23	13	1.89
421454--421594	19	7.8	19	72	17	122	44	19	22	12	1.85
421462--421594	52	2.5	53	87	2	196	43	21	22	12	1.86
421606--421687	33	2.5	33	89	2	119	12	23	21	42	1.86
422220--422312	20	4.6	20	71	19	77	25	18	23	32	1.97
422220--422352	20	6.6	20	71	13	76	24	18	21	34	1.96
422342--422394	21	2.5	22	75	6	65	35	18	24	20	1.95
422217--422414	82	2.4	80	76	10	202	29	18	22	30	1.97
431963--432008	23	2.0	23	83	8	58	34	2	0	63	1.07

Tables:   1   2   3   4   5   6   7   8