genome.fa.s8914.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008914.1 Hibiscus syriacus cultivar Beakdansim tig00112217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601432

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 853 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137419--1137978	125	4.5	122	78	4	505	28	19	18	33	1.95
1141013--1141337	86	3.8	86	82	6	356	22	21	20	34	1.97
1141013--1141365	43	8.2	42	78	9	266	22	21	20	34	1.96
1147725--1147846	31	3.9	32	71	9	99	26	27	27	18	1.98
1147725--1147846	63	1.9	63	83	6	158	26	27	27	18	1.98
1148730--1148894	29	5.6	29	90	4	260	37	22	5	34	1.77
1148825--1148876	17	3.4	17	65	25	51	38	21	3	36	1.72
1155065--1155197	31	4.2	31	70	4	88	27	27	27	18	1.98
1155065--1155198	63	2.1	63	79	9	148	27	26	27	17	1.98
1156068--1156257	29	6.6	29	88	3	267	40	21	3	35	1.71
1156068--1156257	57	3.3	57	87	3	265	40	21	3	35	1.71
1156068--1156257	86	2.2	87	91	3	312	40	21	3	35	1.71
1156293--1156336	19	2.3	19	88	0	70	22	29	29	18	1.97
1159411--1160817	6	235.0	6	78	9	596	3	42	0	53	1.20
1160735--1160832	49	2.0	49	82	4	117	17	26	0	56	1.41
1162986--1163035	20	2.5	20	77	6	57	34	32	18	16	1.92
1162986--1163101	21	5.6	21	66	7	58	34	24	19	21	1.96
1163130--1163233	21	5.0	21	81	6	122	38	25	17	19	1.93
1163130--1163320	20	9.4	20	79	13	144	40	22	17	19	1.91
1163149--1163327	60	2.9	61	78	8	179	40	21	17	20	1.92
1163130--1163325	40	4.8	40	79	10	177	39	22	17	19	1.92
1163881--1163956	20	3.8	20	84	5	84	52	18	17	11	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1163980--1164125	19	8.1	19	73	17	114	13	22	19	44	1.85
1164002--1164125	33	3.5	33	81	8	140	12	22	20	44	1.85
1164061--1164116	20	2.8	20	81	10	78	16	25	19	39	1.91
1165812--1166190	94	4.1	94	93	1	620	21	11	18	47	1.80
1166277--1166335	19	3.5	17	77	17	70	42	23	23	10	1.85
1166292--1166363	14	4.8	14	77	15	72	44	23	23	8	1.80
1166277--1166349	33	2.3	32	95	4	130	42	23	24	9	1.84
1166375--1166495	19	6.8	19	69	19	82	13	22	19	44	1.85
1166378--1166471	33	2.8	33	95	0	161	12	23	20	43	1.86
1168365--1168400	14	2.6	14	95	0	63	33	0	22	44	1.53
1168507--1168557	14	3.1	17	72	21	54	45	17	23	13	1.84
1168507--1168586	33	2.4	33	93	0	133	46	21	21	11	1.82
1168507--1168565	19	3.4	19	73	22	74	45	18	22	13	1.84
1168592--1168689	19	5.7	19	67	22	72	13	20	18	47	1.81
1168598--1168689	33	2.8	34	88	6	136	14	19	17	48	1.80
1171188--1171241	24	2.2	24	93	0	90	40	20	18	20	1.91
1171188--1171255	24	2.8	24	84	0	64	38	20	17	23	1.93
1172099--1172186	21	4.3	21	81	9	110	18	19	26	36	1.94
1172097--1172186	41	2.2	41	89	0	144	17	20	25	36	1.94
1172201--1172270	20	3.5	20	92	0	122	15	14	24	45	1.83
1176856--1176893	18	2.1	18	85	9	51	68	2	13	15	1.32
1177619--1177659	18	2.3	18	91	4	66	60	14	7	17	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1177629--1177718	29	3.1	30	83	12	116	55	14	3	26	1.55
1179043--1179077	2	17.5	2	100	0	70	48	0	0	51	1.00
1186409--1186455	23	2.0	23	100	0	94	23	17	17	42	1.88
1186717--1186762	19	2.4	19	82	7	58	45	0	4	50	1.21
1192466--1192576	57	1.9	57	83	0	141	23	27	16	33	1.95
1206579--1206616	20	1.9	19	89	5	58	28	26	21	23	1.99
1213972--1214020	24	2.0	24	92	0	80	36	10	16	36	1.82
1214332--1214420	34	2.6	33	79	19	94	43	0	4	51	1.21
1215668--1215697	3	10.0	3	100	0	60	66	0	33	0	0.92
1216208--1216252	23	2.0	23	100	0	90	15	8	17	57	1.63
1218548--1218614	31	2.2	31	91	0	107	35	4	23	35	1.76
1218590--1218705	58	2.0	59	86	8	166	48	3	12	35	1.59
1218591--1218717	60	2.2	58	84	8	159	49	3	12	33	1.59
1228031--1228070	21	1.9	21	85	10	55	57	27	0	15	1.38
1234487--1234519	16	2.1	16	94	0	57	30	9	0	60	1.27
1234578--1234610	17	2.0	17	88	5	50	36	6	0	57	1.23
1236108--1236144	18	2.1	18	100	0	74	16	21	21	40	1.91
1239098--1239139	19	2.2	19	87	8	59	16	30	28	23	1.96
1242985--1243024	21	1.9	21	85	10	55	35	10	2	52	1.48
1248153--1248215	27	2.4	27	81	2	65	23	11	19	46	1.82
1249015--1249055	21	2.0	21	85	0	55	31	9	29	29	1.89
1259665--1259702	20	1.9	20	84	10	51	68	2	21	7	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270743--1270889	77	1.9	79	81	8	185	44	6	9	40	1.62
1271549--1271586	19	2.0	20	89	5	60	42	0	2	55	1.14
1273116--1273163	19	2.5	20	82	3	62	52	6	12	29	1.63
1274776--1274825	20	2.4	21	90	6	84	38	40	8	14	1.75
1276522--1276731	64	3.3	65	82	9	227	29	24	18	27	1.98
1276683--1276731	19	2.6	19	84	9	57	24	28	20	26	1.99
1283573--1283667	2	48.0	2	97	2	183	49	0	0	50	1.00
1284151--1284340	64	3.0	65	81	8	185	30	24	17	26	1.97
1284312--1284360	19	2.6	19	84	9	57	24	28	20	26	1.99
1284177--1284360	64	2.9	61	76	15	169	28	25	17	27	1.98
1286968--1287177	69	3.0	69	85	0	285	25	24	29	20	1.99
1291115--1292931	427	4.3	424	78	8	1721	38	9	13	38	1.77
1293414--1293680	142	1.9	141	84	0	354	39	13	13	32	1.84
1294301--1294350	21	2.4	21	89	0	73	24	20	26	30	1.98
1295156--1295210	21	2.6	21	91	5	85	20	20	27	32	1.97
1295177--1295452	42	6.4	42	77	17	205	22	21	21	34	1.97
1295248--1295325	20	3.6	20	69	24	68	23	23	17	35	1.95
1295267--1295428	21	7.6	21	69	18	84	20	20	22	35	1.96
1295250--1295343	46	2.0	46	95	0	170	22	23	20	34	1.97
1295338--1295449	21	5.4	20	69	16	86	20	17	23	38	1.93
1296153--1296257	21	5.1	21	76	13	119	37	21	20	20	1.95
1296167--1296276	21	5.4	19	76	14	103	35	25	19	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1296153--1296276	42	3.0	42	95	2	216	36	23	19	20	1.95
1298000--1298105	36	2.9	36	82	1	140	49	8	14	28	1.72
1298158--1298390	44	5.3	44	87	1	306	32	15	22	29	1.95
1300706--1300866	64	2.5	65	85	7	195	33	18	21	27	1.96
1301356--1301390	18	1.9	18	88	11	54	54	5	17	22	1.64
1302289--1302603	149	2.1	149	97	0	594	27	17	20	34	1.95
1305499--1305659	64	2.5	65	85	7	195	33	18	21	27	1.96
1306151--1306185	18	1.9	18	88	11	54	54	5	17	22	1.64
1307080--1307386	149	2.1	149	98	0	587	27	17	20	34	1.95
1307362--1307406	23	2.0	23	86	0	63	22	24	26	26	2.00
1310287--1310447	64	2.5	65	85	7	195	33	18	21	27	1.96
1310939--1310973	18	1.9	18	88	11	54	54	5	17	22	1.64
1311100--1311153	2	27.0	2	100	0	108	50	0	0	50	1.00
1311909--1312214	149	2.1	149	97	0	576	27	17	20	34	1.95
1312191--1312235	23	2.0	23	90	0	72	22	26	26	24	2.00
1312806--1312884	39	2.0	40	87	2	115	24	25	8	41	1.83
1316539--1317001	235	2.0	236	97	0	883	43	15	20	20	1.88
1321049--1321103	27	2.0	27	100	0	110	47	0	18	34	1.49
1326827--1327005	87	2.0	88	90	1	279	18	13	18	48	1.82
1331293--1331334	21	2.0	21	85	4	57	52	2	9	35	1.47
1344282--1344385	26	4.1	26	71	10	83	50	0	0	49	1.07
1344267--1344484	19	11.8	18	65	20	53	49	1	0	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1353760--1353793	13	2.7	13	95	4	61	55	11	0	32	1.36
1355250--1355285	2	18.0	2	100	0	72	50	0	0	50	1.00
1361355--1361453	8	12.0	8	75	11	76	21	1	1	76	0.90
1361342--1361455	35	3.1	34	76	16	104	24	1	0	72	0.99
1361342--1361414	35	2.1	36	87	10	107	26	2	0	71	1.00
1361363--1361462	24	4.2	24	78	16	118	22	1	1	76	0.91
1361359--1361463	50	2.2	49	86	8	144	22	0	0	75	0.92
1364597--1364645	13	3.8	13	79	15	57	77	6	16	0	0.96
1364718--1364855	69	2.0	69	84	2	179	39	23	12	24	1.89
1365780--1365886	32	3.4	31	85	3	133	27	13	22	37	1.91

Tables:   1   2   3   4   5   6   7   8