genome.fa.s8914.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008914.1 Hibiscus syriacus cultivar Beakdansim tig00112217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601432

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 853 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865323--865669	171	2.0	172	98	0	678	38	18	12	29	1.88
866250--866453	44	4.7	44	84	3	261	32	3	19	44	1.68
866250--866453	87	2.3	87	86	2	275	32	3	19	44	1.68
869536--869583	18	2.6	17	81	12	51	31	29	14	25	1.95
869536--869610	36	2.1	36	82	5	89	32	28	14	25	1.95
872964--873360	200	2.0	199	96	3	737	37	13	19	29	1.90
877058--877095	12	3.2	12	82	14	51	21	10	5	63	1.46
877058--877111	24	2.3	23	84	9	65	25	9	5	59	1.50
877819--877848	15	1.9	15	93	6	51	66	6	16	10	1.41
877819--877849	16	1.9	16	93	0	53	67	6	16	9	1.39
880904--880948	20	2.3	20	85	7	58	13	11	0	75	1.05
881465--881498	17	1.9	18	88	5	52	20	8	14	55	1.65
888593--888627	18	1.9	18	100	0	70	40	8	11	40	1.72
897370--897409	2	20.0	2	100	0	80	50	0	0	50	1.00
899272--899325	26	2.1	25	83	13	65	46	0	1	51	1.11
899606--899655	3	16.7	3	87	0	64	38	4	0	58	1.17
901691--901787	37	2.6	37	81	3	115	40	16	11	31	1.84
902634--902712	13	5.8	13	75	19	63	16	7	1	74	1.11
907090--907171	20	4.0	21	75	20	68	79	8	10	1	1.00
907111--907150	10	3.9	10	84	15	55	80	5	15	0	0.88
907103--907173	13	5.4	13	71	14	56	80	7	11	1	0.97
907778--907832	22	2.5	22	100	0	110	36	27	12	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908021--908080	24	2.7	21	75	14	57	33	13	5	48	1.64
908668--909820	106	10.9	106	88	3	1585	34	24	17	23	1.96
910519--910623	37	2.8	37	88	0	156	40	15	15	29	1.88
911498--911524	4	6.8	4	100	0	54	22	0	0	77	0.76
913737--913799	20	3.3	19	75	14	51	20	20	11	47	1.80
914780--914820	6	6.5	6	83	10	55	14	14	14	56	1.69
918474--918620	53	2.8	52	87	6	199	39	17	23	19	1.92
920045--920172	42	3.1	42	85	5	179	25	18	21	35	1.96
920204--920978	136	5.8	136	91	1	1177	32	17	22	27	1.96
921022--921438	117	3.6	117	89	2	619	39	14	21	24	1.91
921574--921913	128	2.7	128	76	7	305	27	28	17	27	1.98
922192--922235	3	14.7	3	85	0	52	38	4	0	56	1.20
923630--923668	21	1.9	20	84	5	51	23	0	12	64	1.28
924238--924304	35	1.9	35	100	0	134	32	10	5	50	1.61
926314--926352	18	2.2	18	86	9	53	71	0	2	25	0.98
926404--926470	33	2.0	33	100	0	134	26	20	17	34	1.96
931121--931226	33	3.2	33	66	17	94	42	16	2	38	1.62
931103--931226	65	1.9	65	91	0	203	44	14	4	36	1.67
941639--941669	16	1.9	16	93	0	53	29	0	3	67	1.06
943215--943315	3	33.7	3	100	0	202	32	0	0	67	0.91
948113--948180	20	3.5	20	77	2	75	33	4	0	61	1.16
948224--948266	20	2.2	19	87	4	59	55	0	2	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950991--951056	27	2.4	27	97	0	123	37	16	18	27	1.92
951108--951152	16	2.8	16	96	0	81	33	17	13	35	1.89
956960--957007	15	3.3	15	72	16	55	16	18	14	50	1.79
956947--957020	29	2.6	29	89	2	123	18	20	16	44	1.87
957038--957067	12	2.5	12	94	0	51	40	23	3	33	1.71
957377--957600	64	3.5	64	87	3	238	28	17	21	33	1.96
963991--964064	29	2.6	29	97	2	141	18	21	16	43	1.88
964080--964115	12	3.0	12	91	0	63	36	25	5	33	1.79
964422--964642	64	3.5	64	86	3	205	28	17	20	33	1.95
964485--964645	64	2.5	64	90	4	245	28	18	19	32	1.96
987264--987315	22	2.4	21	75	12	52	44	1	0	53	1.11
987912--987941	13	2.2	14	94	5	53	53	0	0	46	1.00
988215--988289	38	2.0	38	91	0	123	41	17	9	32	1.81
988573--988657	32	2.7	32	86	0	107	34	22	11	31	1.90
998923--998952	2	15.0	2	100	0	60	50	0	0	50	1.00
1007597--1007627	16	1.9	16	100	0	62	70	0	12	16	1.16
1007610--1007640	11	2.8	11	95	0	53	70	0	12	16	1.16
1008941--1009016	35	2.2	35	100	0	152	56	2	2	38	1.27
1010722--1010767	3	14.7	3	82	8	56	58	0	0	41	0.98
1010719--1010776	25	2.3	25	85	5	82	55	0	0	44	0.99
1010728--1010786	19	3.2	19	79	16	70	50	0	1	47	1.11
1010719--1010776	22	2.5	23	86	11	82	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011349--1011394	23	2.0	23	86	0	65	15	8	10	65	1.47
1011349--1011383	12	3.0	12	87	8	54	20	8	8	62	1.49
1013687--1013897	102	2.1	102	84	1	280	43	18	16	22	1.88
1015113--1015162	17	3.0	16	85	11	57	26	2	0	72	0.96
1016280--1016348	34	2.0	35	97	2	131	40	17	11	30	1.85
1031434--1031490	23	2.7	21	84	10	64	22	33	26	17	1.96
1035025--1035067	13	3.3	13	86	0	59	30	2	11	55	1.48
1035033--1035092	13	4.7	13	75	4	59	30	3	16	50	1.62
1035048--1035170	50	2.5	50	85	2	149	32	3	17	46	1.65
1035048--1035170	25	4.9	25	86	4	131	32	3	17	46	1.65
1035267--1035300	15	2.3	15	89	0	50	29	0	14	55	1.40
1036301--1036371	36	2.0	36	97	0	133	15	11	5	67	1.39
1036894--1036975	44	1.9	41	85	7	110	34	6	26	32	1.81
1036896--1036986	19	4.4	20	74	17	96	37	5	26	30	1.79
1037663--1037695	16	2.0	17	94	5	59	48	0	0	51	1.00
1038070--1038112	15	2.9	15	89	3	61	44	2	0	53	1.13
1045233--1045304	35	2.0	36	94	2	128	44	23	0	31	1.54
1045233--1045327	36	2.7	35	85	4	102	42	26	2	29	1.67
1046256--1046324	36	1.9	36	87	0	102	28	2	27	40	1.71
1046255--1046344	36	2.6	35	77	11	96	28	2	27	41	1.68
1065609--1065661	25	2.1	26	89	3	81	7	24	11	56	1.60
1068149--1068392	51	4.8	51	82	7	259	48	13	11	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068149--1068391	99	2.4	100	82	5	285	48	13	11	26	1.77
1068834--1068893	30	2.0	30	90	6	95	35	6	15	43	1.72
1068975--1069071	21	4.7	20	82	13	124	21	36	19	22	1.95
1069004--1069071	13	4.9	14	73	18	54	22	35	20	22	1.96
1068975--1069225	20	12.6	20	79	12	146	21	31	19	27	1.98
1069092--1069225	40	3.3	40	92	1	205	18	28	21	31	1.97
1070488--1070535	19	2.5	20	82	3	62	52	6	12	29	1.63
1071761--1071820	30	2.0	30	87	6	86	36	5	15	43	1.68
1071904--1071957	21	2.6	21	87	0	90	24	40	12	22	1.89
1072019--1072086	20	3.4	19	80	11	82	17	25	25	32	1.97
1072195--1072234	20	1.9	22	90	10	66	42	40	5	12	1.64
1073222--1073442	64	3.5	64	82	7	261	33	20	18	27	1.96
1074194--1074411	103	2.1	103	93	0	373	27	13	22	37	1.91
1074428--1074490	23	2.7	23	92	0	99	19	28	26	25	1.98
1079216--1079424	64	3.3	64	83	5	253	33	20	18	27	1.96
1080176--1080401	103	2.2	103	92	1	382	26	13	23	36	1.92
1080410--1080472	23	2.7	23	90	0	90	19	26	26	26	1.99
1081382--1081449	34	2.1	34	83	5	86	32	16	26	25	1.96
1082236--1082363	68	1.9	68	90	0	202	32	24	9	33	1.87
1089002--1089040	17	2.3	17	91	8	62	46	12	0	41	1.42
1105907--1105942	18	2.0	18	100	0	72	27	22	16	33	1.95
1114544--1114589	24	2.0	23	87	8	67	43	4	8	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1130353--1130402	23	2.2	22	78	3	55	48	2	0	50	1.12
1130383--1130574	58	3.3	56	78	6	188	46	8	5	39	1.58
1130412--1130574	29	5.7	28	81	4	182	46	9	4	39	1.57
1130411--1130589	57	3.1	53	74	15	144	45	10	3	39	1.57
1130551--1130620	28	2.5	28	84	9	97	44	17	0	38	1.49
1131472--1131536	25	2.6	25	97	0	121	47	3	3	46	1.33
1131774--1132021	130	1.9	130	93	0	424	35	12	15	36	1.86
1132418--1132493	35	2.2	35	92	0	125	35	1	23	39	1.63
1137454--1137978	41	12.6	41	79	5	468	28	19	17	33	1.95
1137453--1137978	166	3.2	166	88	1	752	28	19	17	33	1.95

Tables:   1   2   3   4   5   6   7   8