genome.fa.s8914.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008914.1 Hibiscus syriacus cultivar Beakdansim tig00112217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1601432

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 853 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433233--433281	12	4.1	12	76	10	55	38	8	4	48	1.52
433455--433559	32	3.3	32	98	0	201	21	16	18	43	1.87
433551--433618	24	2.8	24	82	4	84	16	10	14	58	1.62
433550--433600	14	3.9	14	73	19	56	15	11	13	58	1.63
433670--433706	16	2.2	18	85	9	51	48	16	0	35	1.46
433892--433963	24	3.2	23	82	15	96	15	12	15	56	1.67
433904--433963	20	2.8	21	90	10	86	13	11	16	58	1.63
433905--433967	10	5.9	10	71	14	54	12	9	17	60	1.58
433904--433971	20	3.2	20	80	15	82	11	11	17	58	1.62
433864--433987	44	2.7	47	80	8	146	13	11	16	58	1.64
433898--433988	24	4.0	23	77	11	80	12	12	17	58	1.63
436651--436689	18	2.2	18	85	0	51	20	15	17	46	1.84
438717--438758	20	2.0	21	90	4	68	45	11	0	42	1.41
438734--438764	13	2.4	13	94	0	53	48	9	0	41	1.36
438859--439400	294	1.9	287	82	8	693	34	12	6	46	1.66
441028--441068	19	2.2	19	95	0	73	46	0	31	21	1.52
444869--444908	21	1.9	21	90	10	64	42	2	0	55	1.13
444921--444996	23	3.4	23	76	22	90	52	0	1	46	1.08
444876--444996	41	2.9	42	81	9	124	51	0	1	46	1.16
445227--445299	30	2.4	30	95	0	128	38	13	21	26	1.91
446867--446912	21	2.2	21	84	3	67	30	21	8	39	1.84
447065--447277	99	2.2	99	95	0	381	29	17	15	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453901--453948	21	2.3	21	85	0	60	35	14	8	41	1.76
457615--457666	21	2.5	21	77	0	59	15	30	3	50	1.62
458886--458919	12	2.9	11	87	12	50	44	8	20	26	1.81
459950--459998	25	2.0	25	84	8	64	53	4	6	36	1.45
461503--461529	14	1.9	14	100	0	54	29	37	22	11	1.89
466287--466313	14	1.9	14	100	0	54	29	37	22	11	1.89
467103--467262	81	2.0	82	81	7	195	26	13	19	40	1.89
467852--467889	18	2.1	18	85	9	51	36	0	5	57	1.21
471774--471804	4	7.8	4	100	0	62	22	0	0	77	0.77
475660--476164	74	6.8	74	83	0	562	31	14	22	31	1.94
479523--479575	19	2.8	19	79	0	61	16	16	16	49	1.81
479796--479918	29	4.2	29	84	0	120	22	19	19	38	1.94
482263--482290	2	14.0	2	100	0	56	50	0	50	0	1.00
487280--487317	20	1.9	20	89	10	60	36	0	10	52	1.36
488415--488638	47	4.9	46	93	3	348	21	3	7	67	1.30
488415--488680	94	2.9	91	85	8	294	22	3	7	65	1.35
488630--488678	13	3.6	13	78	8	53	28	4	10	57	1.50
488660--488725	23	2.9	23	79	6	80	22	3	7	66	1.31
494126--494222	43	2.3	43	96	1	178	37	37	10	15	1.82
494337--494455	24	5.0	24	91	0	193	40	20	12	26	1.88
496996--497052	18	3.2	18	100	0	114	10	21	50	17	1.75
499181--499269	43	2.1	43	97	0	169	35	35	11	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499388--499506	24	5.0	24	88	0	175	41	20	12	26	1.88
499388--499529	72	2.0	71	86	4	196	43	19	11	25	1.85
502039--502077	7	5.4	7	87	6	60	25	25	33	15	1.95
502039--502080	15	2.9	15	92	3	68	23	26	33	16	1.96
502030--502077	22	2.1	23	88	7	71	25	27	33	14	1.94
502069--502133	31	2.1	31	85	0	85	15	16	46	21	1.84
516743--516788	15	3.1	15	81	9	58	82	2	15	0	0.76
516744--516777	11	3.2	10	88	12	50	85	2	11	0	0.71
516743--516807	14	4.3	15	73	11	53	75	1	20	3	1.02
525828--525940	36	3.1	36	75	9	113	29	14	7	48	1.71
526380--526596	116	1.9	116	83	0	281	37	13	21	27	1.91
526734--526764	15	2.1	15	100	0	62	35	6	32	25	1.82
542515--542544	2	15.0	2	92	0	51	50	3	0	46	1.18
545809--546372	299	1.9	294	83	7	728	38	20	13	26	1.91
546893--546957	3	21.7	3	100	0	130	67	0	0	32	0.91
548694--548781	29	2.9	30	90	8	135	42	11	12	34	1.79
552132--552161	15	2.0	15	100	0	60	13	0	33	53	1.40
553425--553512	29	2.9	30	91	8	144	42	11	13	32	1.80
554926--554972	2	23.0	2	95	4	85	48	2	0	48	1.13
560059--560103	20	2.2	20	84	7	56	60	2	4	33	1.29
560224--560250	12	2.2	12	100	0	54	70	0	0	29	0.88
560703--560747	13	3.6	13	88	11	67	17	51	17	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560764--560859	2	51.0	2	71	12	60	52	0	0	47	1.00
561582--561704	43	2.8	45	81	8	155	45	0	1	52	1.10
568174--568329	58	2.8	57	83	3	201	24	22	25	28	2.00
568174--568316	27	5.1	27	66	21	80	24	21	27	26	1.99
570759--570799	3	14.3	3	87	10	50	60	0	0	39	0.96
576746--576789	22	2.0	22	86	4	63	52	4	4	38	1.42
582715--582756	17	2.5	17	84	0	57	52	0	2	45	1.13
589730--589786	6	9.5	6	90	0	87	17	59	1	21	1.46
589730--589786	18	3.2	18	94	0	96	17	59	1	21	1.46
591635--591675	21	1.9	22	85	5	57	24	17	17	41	1.89
591764--591811	18	2.7	18	100	0	96	25	27	16	31	1.97
593498--593544	2	24.0	2	95	4	87	51	0	0	48	1.00
593444--593503	26	2.4	25	83	5	77	40	1	0	58	1.08
600042--600087	24	1.9	24	81	0	56	30	10	15	43	1.81
600071--600142	24	3.0	24	78	8	83	19	13	15	51	1.76
604812--604876	24	2.7	24	73	0	58	24	12	12	50	1.74
607994--608248	112	2.3	114	83	8	317	46	11	3	38	1.58
608065--608243	56	3.2	57	82	10	242	46	12	2	37	1.56
607940--608242	56	5.4	56	75	12	230	47	9	4	38	1.57
608092--608265	56	3.1	54	75	14	142	48	10	3	37	1.55
610815--610886	28	2.6	27	73	8	65	48	0	1	50	1.09
611501--611528	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613219--613248	9	3.3	9	90	0	51	73	0	0	26	0.84
613427--613473	24	2.0	24	87	8	69	51	8	17	23	1.72
613907--613976	20	3.5	20	70	18	72	12	22	24	40	1.89
613843--614005	41	3.9	41	92	4	256	15	20	25	39	1.91
615144--615221	21	3.8	21	76	8	79	38	25	16	19	1.92
615197--615298	36	2.7	37	90	7	152	34	28	22	14	1.94
615233--615321	41	2.2	41	91	0	142	40	25	21	12	1.88
615174--615300	21	6.4	21	65	18	83	34	28	20	16	1.94
615249--615389	41	3.4	41	84	9	173	39	24	18	17	1.92
615313--615386	21	3.6	21	74	3	87	35	25	17	21	1.95
615401--615446	19	2.3	20	81	7	58	23	17	30	28	1.97
615802--615846	22	2.0	22	83	8	56	20	2	2	75	1.01
615829--615869	21	1.9	22	85	5	57	36	2	0	60	1.10
627828--627954	31	4.1	31	78	9	141	30	18	20	30	1.96
627942--628013	30	2.4	30	88	0	99	23	20	23	31	1.98
632683--632778	31	3.1	31	76	8	104	34	15	19	30	1.93
632735--632810	31	2.5	31	84	0	89	32	17	19	30	1.95
637817--638018	96	2.1	96	100	0	404	32	12	15	39	1.85
642907--643001	43	2.2	43	82	0	109	45	4	8	42	1.54
643563--643640	31	2.7	29	78	9	79	42	3	6	47	1.47
647137--647169	12	2.8	12	86	13	50	51	0	0	48	1.00
647669--647698	12	2.5	12	94	0	51	33	3	13	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648127--648190	28	2.3	28	78	7	69	28	17	4	50	1.66
649389--649563	29	6.2	28	78	10	151	33	1	14	50	1.51
650389--650554	42	4.0	42	93	0	260	19	24	23	31	1.98
651609--651655	23	2.0	23	84	8	60	42	4	2	51	1.33
655614--655675	32	1.9	32	86	0	88	29	30	17	22	1.97
655716--655755	15	2.6	15	84	4	53	32	30	22	15	1.94
657893--658070	85	2.1	84	86	4	241	30	20	16	32	1.95
658128--658187	2	30.0	2	100	0	120	50	0	0	50	1.00
659589--659616	12	2.3	12	100	0	56	75	10	7	7	1.20
662109--662183	23	3.3	22	70	15	71	40	8	20	32	1.81

Tables:   1   2   3   4   5   6   7   8