genome.fa.s8942.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2383254

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180734--180778	23	2.0	23	100	0	90	40	20	8	31	1.83
180732--180788	23	2.3	24	82	11	80	36	15	8	38	1.79
181247--181352	21	5.1	21	88	1	133	26	22	16	33	1.96
181163--181417	20	12.6	20	78	10	130	32	23	16	27	1.96
181327--181429	20	5.2	20	83	2	127	40	21	15	22	1.90
181557--181602	22	2.1	22	87	0	65	28	41	8	21	1.83
181812--181843	13	2.5	13	100	0	64	0	6	15	78	0.95
181882--181955	20	3.7	20	94	0	130	52	18	16	12	1.74
184338--184377	14	2.9	14	80	0	53	30	0	17	52	1.45
184287--184425	67	2.2	63	81	10	149	32	1	15	50	1.53
184487--184544	20	2.9	20	92	0	98	41	22	18	17	1.90
184586--184650	34	1.9	34	84	6	87	20	21	21	36	1.95
187269--187322	24	2.2	24	93	0	90	40	16	18	24	1.90
187448--187481	12	2.8	12	90	0	50	14	0	29	55	1.40
188274--188317	21	2.1	21	86	0	61	36	13	25	25	1.92
189962--190041	35	2.3	35	86	0	106	43	21	0	35	1.53
189975--190057	35	2.4	35	83	0	103	44	28	0	26	1.54
190211--190504	149	2.0	148	93	0	507	36	6	9	48	1.61
191206--191252	11	4.4	11	91	2	78	57	10	25	6	1.56
191198--191252	22	2.6	21	88	5	76	58	12	21	7	1.59
192180--192251	35	2.0	36	86	7	103	33	0	20	45	1.52
202416--202456	18	2.3	18	100	0	82	39	0	17	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207763--207837	30	2.5	31	82	4	89	48	12	10	29	1.74
213093--213118	13	2.0	13	100	0	52	38	15	23	23	1.92
213391--213444	21	2.6	21	93	0	90	25	33	20	20	1.97
214493--214635	75	1.9	75	83	0	187	29	23	20	27	1.99
221724--221761	19	2.0	19	89	0	58	31	0	13	55	1.38
221711--221848	43	3.4	43	70	23	145	26	0	13	59	1.35
221800--221837	19	2.0	19	89	0	58	31	0	13	55	1.38
221696--221904	76	2.8	76	95	2	368	26	0	11	61	1.34
222552--222609	14	4.0	15	73	22	52	24	6	1	67	1.25
222560--222593	15	2.2	15	89	5	50	26	2	0	70	1.01
228103--228145	16	2.6	16	85	3	50	11	4	2	81	0.93
228102--228152	11	4.7	11	79	11	61	13	3	1	80	0.94
228102--228152	17	3.1	15	79	20	50	13	3	1	80	0.94
228159--228201	20	2.2	20	87	8	61	25	2	0	72	0.97
230437--230486	20	2.5	20	81	15	68	22	6	0	72	1.07
231611--231653	21	2.0	22	78	13	54	25	18	16	39	1.91
245629--245683	24	2.2	25	87	9	76	47	3	5	43	1.44
245850--245874	13	1.9	13	100	0	50	52	0	0	48	1.00
247910--247951	2	21.0	2	100	0	84	50	0	0	50	1.00
248437--248479	16	2.6	16	85	7	52	58	4	4	32	1.39
250713--250862	25	6.0	24	92	4	210	29	15	20	35	1.93
250713--250862	50	3.0	50	92	1	239	29	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250713--250862	75	2.0	75	92	2	248	29	15	20	35	1.93
250934--250994	3	21.0	3	77	12	65	67	1	3	27	1.16
250942--251000	29	2.1	28	93	3	82	66	3	5	25	1.28
251180--251576	87	4.4	89	89	5	525	25	19	28	26	1.99
251252--251579	46	7.4	42	66	16	162	25	20	28	25	1.99
252558--252583	1	26.0	1	100	0	52	0	0	0	100	0.00
263517--263559	16	2.6	16	85	7	52	58	4	4	32	1.39
265801--265950	25	6.0	24	92	3	192	29	14	20	36	1.92
265801--265950	75	2.0	75	87	5	214	29	14	20	36	1.92
266022--266082	3	21.0	3	77	12	65	67	1	3	27	1.16
266030--266088	29	2.1	28	93	3	82	66	3	5	25	1.28
267042--267232	35	5.5	35	75	7	167	34	17	21	26	1.96
271030--271077	16	2.9	16	96	3	87	56	12	2	29	1.48
271899--271939	22	1.9	22	85	5	57	63	12	17	7	1.50
274258--274311	21	2.6	21	84	0	81	27	24	14	33	1.94
277622--277654	2	16.5	2	93	0	57	54	0	45	0	0.99
279067--279149	40	2.1	40	100	0	166	32	19	16	31	1.94
284117--284186	36	1.9	36	85	5	97	45	7	17	30	1.75
288299--288351	24	2.2	24	96	0	97	24	24	3	47	1.68
289870--289911	12	3.2	12	81	18	57	14	40	26	19	1.89
289887--289918	7	4.4	7	92	7	55	12	34	28	25	1.92
289872--289917	15	3.3	15	91	8	71	15	36	26	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292448--292562	24	4.8	24	81	9	128	23	19	16	40	1.90
295811--295895	31	2.8	30	80	7	73	36	20	9	34	1.85
298174--298252	39	2.0	39	92	0	131	35	13	25	25	1.93
301142--301196	25	2.2	25	90	0	83	49	0	12	38	1.41
301741--302160	158	2.7	157	84	3	497	30	19	4	45	1.71
301785--302160	157	2.4	155	84	5	470	31	19	5	44	1.73
310290--310359	3	23.3	3	100	0	140	67	0	0	32	0.91
310360--310393	3	11.3	3	100	0	68	32	0	0	67	0.91
318574--318625	15	3.5	15	87	10	79	55	13	11	19	1.68
319259--319398	44	3.2	44	81	5	176	33	13	23	29	1.93
320611--320922	38	8.1	38	82	3	374	27	16	15	41	1.88
320847--321057	45	4.8	45	77	8	200	24	20	17	38	1.93
320889--321056	90	1.9	90	85	0	237	22	20	18	38	1.93
321053--321661	135	4.5	135	85	2	731	30	19	18	31	1.96
321053--321661	271	2.2	271	84	4	780	30	19	18	31	1.96
324954--324996	22	2.0	22	100	0	86	34	18	4	41	1.71
331247--331274	3	9.3	3	100	0	56	0	0	32	67	0.91
332443--332504	21	3.0	21	76	4	72	33	12	27	25	1.93
335566--335619	21	2.6	21	74	8	56	29	14	24	31	1.95
337375--337601	45	5.0	45	84	2	269	30	20	9	39	1.84
344267--344493	45	5.0	45	86	2	287	29	21	9	40	1.84
347433--347457	12	2.1	12	100	0	50	60	16	0	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354841--354886	2	24.5	2	87	12	71	50	0	0	50	1.00
354886--354916	2	15.5	2	100	0	62	0	0	48	51	1.00
358449--358502	22	2.5	22	74	17	58	37	18	5	38	1.74
362252--362328	29	2.7	29	94	4	131	20	7	10	61	1.53
362557--362598	21	2.0	21	81	9	50	26	16	11	45	1.82
363198--363262	31	2.1	32	88	2	96	26	9	7	56	1.57
365836--365990	76	2.0	76	94	0	274	47	12	24	15	1.81
367393--367457	30	2.2	29	86	8	87	16	20	16	46	1.85
369732--369771	20	2.0	21	95	5	73	25	20	22	32	1.98
374196--374236	16	2.7	16	77	7	50	36	0	0	63	0.95
374419--374501	30	2.8	30	81	3	87	44	15	15	24	1.85
375334--375373	20	2.0	20	85	9	55	42	2	17	37	1.63
376724--376843	41	2.9	41	77	2	125	32	23	15	28	1.95
376724--376839	21	5.7	20	67	6	54	33	21	16	28	1.95
379832--379879	25	1.9	25	91	0	78	62	8	4	25	1.41
380310--380442	32	4.2	31	76	10	117	40	8	16	34	1.78
380306--380432	64	2.0	64	82	3	157	40	7	14	36	1.76
380356--380448	32	2.9	32	87	6	134	40	5	18	35	1.73
380357--380466	32	3.4	32	86	5	98	40	8	17	34	1.79
385924--386036	20	5.7	20	74	8	95	29	11	16	42	1.83
385915--386053	40	3.5	40	79	9	158	30	10	18	40	1.84
385989--386064	20	3.8	19	79	8	80	32	7	21	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388831--388905	33	2.2	35	80	9	100	25	8	26	40	1.83
389334--389402	29	2.4	29	92	0	120	31	13	11	43	1.79
394016--394070	27	2.0	27	96	0	101	32	10	10	45	1.74
396264--396305	15	2.6	16	82	17	52	61	0	4	33	1.17
396594--396638	2	23.0	2	95	4	83	48	0	0	51	1.00
398138--398573	82	5.4	81	82	4	486	24	18	20	36	1.95
398137--398566	164	2.6	162	82	2	540	23	18	20	36	1.94
398716--398948	89	2.6	89	80	7	224	31	20	16	31	1.95
398990--399058	29	2.4	29	82	0	84	39	7	23	30	1.82
399005--399082	29	2.7	29	78	4	77	32	12	26	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11