genome.fa.s8942.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2383254

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871024--871057	12	2.9	12	91	4	52	73	0	0	26	0.83
872692--872781	3	31.0	3	75	8	80	63	1	1	34	1.09
873020--873367	137	2.5	137	85	3	459	26	18	14	40	1.89
874345--874395	19	2.9	18	78	21	63	33	3	5	56	1.42
874143--874929	274	2.9	277	94	1	1411	37	7	8	46	1.63
878276--878326	16	3.1	17	72	8	52	56	9	0	33	1.32
878318--878374	22	2.6	22	75	8	62	50	7	3	38	1.46
879694--879754	22	2.8	22	87	0	95	39	11	11	37	1.78
880124--880285	54	3.0	54	93	0	279	24	26	14	34	1.94
881159--881404	75	3.3	75	88	1	332	30	21	15	32	1.94
883930--883974	1	45.0	1	81	0	54	0	8	0	91	0.43
884267--884298	2	16.0	2	93	0	55	50	3	0	46	1.17
885960--885997	14	2.6	15	87	4	51	63	10	13	13	1.53
886076--886162	43	2.0	44	88	2	131	34	22	11	31	1.90
887960--887995	12	3.1	12	92	4	56	69	0	0	30	0.89
887886--888142	133	1.9	137	86	7	375	49	7	5	37	1.55
889636--889678	3	15.0	3	85	9	63	69	0	0	30	0.88
889636--889678	20	2.2	20	91	0	68	69	0	0	30	0.88
890086--890167	23	3.7	22	76	10	71	35	29	20	14	1.93
890131--890168	20	1.9	20	94	0	67	34	31	18	15	1.92
890364--890397	15	2.3	15	100	0	68	29	26	5	38	1.80
891586--891651	25	2.6	25	95	2	114	54	24	4	16	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897678--897712	15	2.3	15	100	0	70	37	37	8	17	1.80
917665--917696	17	1.9	17	93	6	57	34	0	0	65	0.93
919948--920106	60	2.6	60	77	7	144	17	12	8	61	1.54
919932--920110	30	5.9	29	77	12	121	17	11	7	63	1.50
920386--920425	21	1.9	21	89	0	62	15	5	2	77	1.04
920384--920425	11	3.9	11	81	6	50	16	4	2	76	1.07
920392--920433	21	2.0	21	81	9	50	14	7	4	73	1.21
923359--923387	3	9.7	3	100	0	58	34	0	0	65	0.93
925495--925576	28	2.9	28	80	10	105	25	13	13	47	1.79
925584--926062	131	3.6	130	80	3	505	27	32	16	23	1.96
926280--926341	3	20.7	3	96	0	115	1	0	30	67	1.00
927634--927707	28	2.5	30	87	8	100	22	14	4	58	1.54
935203--935229	2	13.5	2	100	0	54	51	0	0	48	1.00
935482--935601	52	2.3	52	98	0	231	24	19	24	32	1.97
935610--935764	65	2.4	64	82	3	177	28	19	21	30	1.98
944255--944415	65	2.5	65	82	5	184	27	18	24	30	1.97
952074--952216	73	2.0	73	90	0	223	41	11	9	37	1.74
952829--952879	23	2.3	21	81	15	59	9	9	5	74	1.21
954714--954745	16	2.0	16	93	0	55	40	0	0	59	0.97
954695--954866	19	8.8	19	70	17	70	40	1	1	57	1.14
954855--954902	22	2.2	22	81	7	53	41	0	0	58	0.98
954992--955040	19	2.5	20	81	15	59	61	2	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962767--962881	56	2.1	55	85	1	149	33	17	28	20	1.96
964335--964407	38	1.9	37	81	13	87	31	2	4	61	1.29
977306--977346	22	1.9	23	85	14	61	53	7	14	24	1.66
981023--981053	12	2.6	12	94	0	53	22	38	16	22	1.92
982207--982485	137	2.1	134	82	5	328	40	16	13	29	1.87
984804--984855	20	2.6	21	78	6	54	34	13	26	25	1.93
987648--987739	31	3.0	31	95	0	166	25	23	14	36	1.92
987987--988028	2	21.0	2	100	0	84	50	0	0	50	1.00
988113--988147	10	3.5	10	92	7	54	62	0	0	37	0.95
988387--988424	20	1.9	20	84	10	51	63	15	5	15	1.48
989542--989602	19	3.0	21	90	9	108	24	9	0	65	1.23
990256--990322	31	2.2	31	88	0	98	32	26	10	29	1.90
990263--990329	31	2.2	31	94	0	116	26	28	13	31	1.94
997138--997192	23	2.4	23	79	11	60	40	0	5	54	1.23
997619--997697	3	27.0	3	94	5	144	32	0	0	67	0.91
999167--999211	19	2.4	19	96	0	81	37	8	6	46	1.61
999577--999634	13	4.7	13	72	20	52	25	39	1	32	1.66
999626--999701	22	3.5	22	96	0	134	28	35	6	28	1.82
999572--999656	35	2.4	36	90	3	138	25	37	3	32	1.73
1000070--1000110	6	6.7	6	83	5	55	80	4	14	0	0.87
1000070--1000110	19	2.2	19	87	12	59	80	4	14	0	0.87
1001363--1001417	24	2.3	23	79	14	58	30	9	23	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003615--1003695	35	2.3	36	91	2	128	25	37	3	33	1.74
1003665--1003718	22	2.5	22	93	0	90	27	35	5	31	1.80
1004499--1004540	22	2.0	20	86	9	57	71	2	2	23	1.10
1004751--1004794	23	1.9	23	90	0	70	20	4	31	43	1.72
1008909--1008959	20	2.5	20	75	9	50	43	1	5	49	1.38
1010378--1010429	22	2.4	21	75	12	52	25	5	3	65	1.32
1013611--1013665	25	2.1	27	83	6	69	69	0	27	3	1.05
1016251--1016334	21	4.0	21	88	1	114	46	3	5	44	1.45
1016250--1016351	22	4.5	22	80	9	100	45	2	7	44	1.48
1016338--1016362	13	1.9	13	100	0	50	40	0	16	44	1.47
1016311--1016387	41	1.9	38	87	7	109	45	2	10	41	1.52
1016434--1016473	19	2.1	19	90	0	62	20	7	0	72	1.08
1017795--1017827	17	1.9	17	88	11	50	18	3	0	78	0.87
1017997--1018038	20	2.1	19	86	8	57	45	2	0	52	1.13
1018841--1018882	18	2.6	16	85	14	52	52	2	0	45	1.13
1020067--1020296	46	5.1	46	88	6	337	21	22	13	42	1.87
1020067--1020296	88	2.6	90	88	6	333	21	22	13	42	1.87
1020470--1020724	55	4.6	55	84	3	300	32	17	12	37	1.87
1020470--1020724	108	2.3	109	83	4	298	32	17	12	37	1.87
1021200--1021289	42	2.1	42	93	0	153	23	22	12	42	1.87
1025117--1025219	45	2.3	44	82	11	113	29	19	22	29	1.98
1031013--1031197	64	2.9	65	82	4	198	32	16	19	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031055--1031197	65	2.2	64	83	3	171	32	16	20	30	1.95
1031095--1031217	65	1.9	65	81	6	151	34	16	19	30	1.94
1031554--1031592	13	3.0	13	92	0	60	20	23	23	33	1.97
1031617--1031867	85	2.9	84	87	6	351	31	21	15	31	1.94
1035225--1035252	14	2.0	14	100	0	56	42	14	7	35	1.73
1037783--1037838	15	3.7	15	82	2	67	7	17	12	62	1.51
1042396--1042456	32	1.9	32	82	0	77	57	6	8	27	1.53
1044407--1044441	4	9.0	4	87	6	54	25	2	0	71	1.00
1044668--1044696	14	2.0	15	93	6	51	41	0	0	58	0.98
1044681--1044736	29	1.9	29	88	0	85	46	0	1	51	1.11
1045840--1045876	17	2.2	17	95	0	65	72	0	5	21	1.04
1046806--1046848	21	2.0	23	86	13	65	58	6	0	34	1.25
1048224--1048318	21	4.7	20	78	10	77	51	1	1	46	1.15
1048236--1048347	6	18.7	6	65	17	54	50	1	0	48	1.11
1048253--1048354	39	2.7	37	77	18	102	50	0	0	48	1.07
1048523--1048605	36	2.3	37	93	2	141	14	20	16	48	1.81
1048523--1048624	36	2.9	35	88	5	118	15	18	18	47	1.83
1055888--1055943	20	2.7	21	75	2	69	33	21	12	32	1.91
1056023--1056077	20	2.8	20	88	0	83	29	14	25	30	1.95
1058559--1058591	14	2.4	14	100	0	66	54	6	0	39	1.25
1059042--1059069	2	14.0	2	100	0	56	50	0	0	50	1.00
1061880--1061940	3	20.0	3	96	3	113	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065537--1065579	21	2.0	21	86	0	59	6	18	55	18	1.64
1067466--1067522	25	2.3	25	78	6	62	22	12	17	47	1.81
1073782--1073868	24	3.7	23	73	6	66	45	18	12	22	1.83
1077036--1077088	23	2.2	26	90	10	85	30	24	5	39	1.78
1077069--1077104	12	3.0	12	95	0	63	38	25	2	33	1.70
1083739--1083772	15	2.3	15	94	0	59	35	29	17	17	1.93
1083843--1083911	24	2.8	26	83	12	85	31	24	5	37	1.79
1083876--1083911	12	3.0	12	91	0	63	36	25	5	33	1.79
1089514--1089559	20	2.3	20	85	7	58	28	23	32	15	1.95
1091180--1091231	18	2.7	19	74	14	61	59	1	25	13	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11