genome.fa.s8942.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2383254

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611346--612115	207	3.7	207	86	1	1035	30	15	22	31	1.95
611346--612228	153	5.7	153	78	7	705	30	15	22	31	1.94
613411--613621	37	5.4	37	63	20	99	29	23	14	32	1.94
613444--613579	42	3.4	42	66	14	115	29	22	14	33	1.94
613411--613616	79	2.6	79	91	0	331	29	23	15	32	1.95
619759--619788	15	1.9	16	93	6	53	70	0	0	30	0.88
620165--620201	13	2.7	14	91	4	58	5	35	8	51	1.55
621088--621123	5	6.8	5	90	9	54	61	0	0	38	0.96
621088--621123	16	2.2	16	90	9	56	61	0	0	38	0.96
624994--625036	2	21.5	2	100	0	86	48	0	0	51	1.00
628881--628970	32	2.9	31	80	8	87	36	16	5	41	1.72
628881--628970	29	2.9	32	83	8	98	36	16	5	41	1.72
636729--636769	6	7.2	6	83	10	50	21	14	0	63	1.30
640772--640821	25	2.0	25	84	0	64	24	32	4	40	1.73
652551--652599	21	2.4	21	77	16	59	53	4	0	42	1.20
657419--657459	22	1.9	21	85	5	55	14	19	14	51	1.77
659102--660178	358	3.0	358	95	0	1929	34	19	15	29	1.93
662477--662508	5	6.4	5	92	0	55	43	15	18	21	1.87
664101--664133	16	2.1	16	88	5	50	27	6	6	60	1.44
665156--665262	35	3.1	35	84	2	135	40	9	10	40	1.71
665156--665235	17	4.6	17	69	9	63	40	8	10	41	1.70
665187--665241	17	3.2	17	72	10	58	43	10	7	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666896--666943	2	24.0	2	100	0	96	50	0	0	50	1.00
666988--667031	18	2.5	17	82	17	54	40	13	2	43	1.57
670441--670473	16	2.1	16	88	5	50	27	6	6	60	1.44
671539--671604	17	3.8	17	78	9	71	37	13	13	34	1.84
671530--671602	34	2.1	35	92	2	121	39	13	10	35	1.80
673047--673097	22	2.3	22	100	0	102	29	33	3	33	1.76
680266--680298	16	2.1	16	88	5	50	27	6	6	60	1.44
681316--681370	18	3.1	18	76	5	67	34	7	12	45	1.70
681311--681395	35	2.5	35	90	1	127	40	7	10	42	1.67
684351--684398	23	2.0	23	84	12	60	37	2	4	56	1.30
685653--685694	22	2.0	21	85	4	57	42	33	0	23	1.55
687942--687974	16	2.1	16	88	5	50	27	6	6	60	1.44
689012--689085	17	4.3	18	78	13	75	41	14	6	36	1.73
689031--689103	34	2.1	35	89	2	112	39	13	9	36	1.78
689039--689105	17	3.9	17	80	2	71	37	13	11	37	1.82
695795--695824	14	2.1	14	93	0	51	83	0	3	13	0.77
695813--695869	3	19.3	3	82	10	64	63	5	0	31	1.17
695908--695948	16	2.5	16	84	4	55	48	9	0	41	1.36
695993--696020	2	14.0	2	100	0	56	50	0	0	50	1.00
696303--696367	22	3.0	22	86	0	85	55	9	12	23	1.65
696760--696836	31	2.4	32	80	2	93	42	7	15	33	1.76
704801--704847	22	2.1	22	88	0	67	53	14	10	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705222--705336	32	3.6	32	83	0	131	36	10	19	33	1.86
707037--707119	43	1.9	43	97	0	157	36	14	22	26	1.93
708340--708378	20	2.0	20	89	0	60	35	0	20	43	1.52
708474--708501	14	2.0	14	100	0	56	42	0	21	35	1.53
716433--716486	28	1.9	28	92	0	90	57	5	11	25	1.55
716431--716486	16	3.8	16	77	18	66	58	5	10	25	1.52
716886--716967	32	2.6	32	82	0	92	39	8	18	34	1.81
720020--720061	20	2.1	20	82	8	50	35	0	26	38	1.57
727009--727048	16	2.5	16	83	0	62	42	7	7	42	1.61
730583--730953	156	2.4	157	83	1	458	30	17	7	44	1.76
732662--732686	11	2.3	11	100	0	50	24	0	32	44	1.54
733456--733525	31	2.3	30	85	7	88	28	21	15	34	1.94
733468--733527	30	1.9	32	93	6	106	26	21	18	33	1.96
735167--735308	71	2.0	71	95	0	257	28	14	19	38	1.91
736230--736281	20	2.6	20	93	0	86	61	13	11	13	1.57
739103--739156	26	2.1	26	86	6	74	31	1	51	14	1.53
739112--739165	27	2.0	27	82	7	65	31	1	51	14	1.53
739578--739645	33	2.1	33	88	0	100	41	7	7	44	1.60
740175--740218	3	14.7	3	100	0	88	31	0	0	68	0.90
741368--741466	40	2.5	41	85	5	114	30	17	20	32	1.95
741386--741466	40	2.0	40	90	0	126	34	18	18	28	1.95
741407--741875	41	11.4	41	84	3	433	27	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741509--741871	86	4.4	84	80	7	341	26	19	19	34	1.95
744472--744792	43	7.5	42	81	4	322	23	21	20	33	1.97
744472--744792	85	3.8	85	81	4	351	23	21	20	33	1.97
744473--744792	128	2.5	128	77	4	324	24	21	20	34	1.97
745451--745534	30	2.9	30	75	12	77	58	1	16	23	1.45
745805--745847	16	2.7	16	96	0	77	60	23	9	6	1.51
746553--746606	28	1.9	28	92	0	90	59	14	12	12	1.62
746553--746608	14	4.0	14	84	9	69	57	16	14	12	1.66
748415--748451	19	1.9	19	88	0	56	51	0	18	29	1.47
755601--755728	59	2.2	59	88	0	184	30	24	17	27	1.97
760950--760974	12	2.1	12	100	0	50	32	8	24	36	1.84
768246--768296	23	2.2	23	92	0	93	17	27	13	41	1.87
776259--776297	20	2.0	20	94	0	69	33	0	23	43	1.54
784424--784498	22	3.4	23	74	9	75	54	9	12	24	1.66
785781--785854	22	3.4	22	90	0	103	37	13	14	33	1.86
786530--787194	45	14.8	45	91	0	1035	24	23	18	34	1.96
787447--787484	3	12.7	3	94	0	67	34	2	0	63	1.09
788917--788976	3	19.3	3	79	16	52	28	0	3	68	1.05
788917--788976	11	5.4	11	74	18	52	28	0	3	68	1.05
789481--789532	20	2.7	20	96	3	97	34	13	3	48	1.61
798676--798717	14	3.0	14	79	6	50	40	21	9	28	1.84
812091--812129	3	13.0	3	100	0	78	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
820729--820778	22	2.3	22	85	0	73	30	20	22	28	1.98
823038--823079	22	1.9	22	95	0	75	23	16	2	57	1.51
824520--824552	17	1.9	17	88	11	50	66	3	3	27	1.21
826134--826898	105	7.4	105	93	3	1318	22	18	25	33	1.96
827649--827761	58	1.9	58	87	3	165	12	18	12	56	1.66
838521--838554	17	1.9	18	94	5	61	64	2	2	29	1.22
840921--840947	2	13.5	2	100	0	54	51	0	0	48	1.00
841658--841691	2	17.0	2	100	0	68	50	0	0	50	1.00
842111--842145	3	11.3	3	93	6	61	2	31	65	0	1.07
842870--842940	21	3.4	20	74	18	65	38	23	18	19	1.93
842890--842961	21	3.5	20	76	14	74	34	26	19	19	1.96
842859--842977	42	2.9	42	91	2	179	36	23	18	21	1.95
842911--842977	21	3.3	19	76	12	71	38	20	19	20	1.93
842973--843025	21	2.5	21	93	0	88	16	20	32	30	1.95
843481--843637	78	2.0	79	88	3	237	36	14	16	33	1.89
845663--845701	20	2.0	20	89	0	60	25	23	23	28	1.99
847669--847735	30	2.3	28	82	10	80	50	2	1	44	1.26
855568--855646	24	3.2	26	74	17	69	54	0	0	45	0.99
855604--855643	19	2.1	19	85	0	53	55	0	0	45	0.99
855663--855709	12	4.0	12	88	2	69	31	46	10	10	1.73
855663--855709	24	2.0	24	91	4	78	31	46	10	10	1.73
856041--856075	17	2.1	17	89	10	54	37	0	8	54	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856035--856129	45	2.1	45	80	7	104	29	3	4	63	1.29
856052--856127	9	8.3	9	72	15	50	30	3	2	63	1.26
856488--856535	2	24.0	2	100	0	96	50	0	0	50	1.00
857281--857571	103	2.8	105	84	4	394	27	14	15	41	1.87
860092--860125	16	2.1	17	88	5	52	41	8	5	44	1.60
865221--865268	21	2.2	22	82	14	64	47	2	22	27	1.62
866169--866219	22	2.3	22	96	0	93	37	9	9	43	1.71
870117--870150	16	2.1	17	88	5	52	41	17	2	38	1.65
870899--870934	18	2.0	18	100	0	72	44	0	0	55	0.99
871011--871050	19	2.1	19	95	0	71	72	0	0	27	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11