genome.fa.s8942.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008942.1 Hibiscus syriacus cultivar Beakdansim tig00112261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2383254

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399185--399302	38	3.1	37	82	2	137	36	16	16	31	1.90
399177--399325	76	2.0	76	83	2	192	36	14	18	30	1.91
399235--399325	38	2.4	38	81	0	110	37	13	24	25	1.91
399235--399550	167	1.9	167	88	1	472	35	14	24	26	1.94
399107--399488	205	1.9	205	83	0	494	37	15	19	27	1.92
399381--399489	38	2.9	38	87	0	146	35	14	22	26	1.93
399407--399621	100	2.1	100	84	5	288	35	14	23	25	1.94
399507--399588	38	2.2	38	88	0	119	39	14	19	26	1.90
418485--418608	32	4.0	30	80	10	126	35	23	17	23	1.95
418485--418606	62	2.0	62	83	8	158	36	22	18	23	1.95
424447--424942	134	3.7	134	79	5	518	32	16	19	32	1.94
426420--426464	22	2.0	22	87	8	65	6	15	0	77	0.96
426429--426470	11	3.8	12	87	12	56	7	14	0	78	0.95
463157--463274	47	2.6	44	83	7	146	38	7	22	31	1.82
481531--481569	18	2.2	18	85	0	51	23	7	2	66	1.30
486141--486181	21	1.9	22	85	5	57	12	17	9	60	1.57
491921--491958	17	2.3	16	90	4	58	36	0	0	63	0.95
495782--496029	131	1.9	131	89	3	392	34	8	16	40	1.79
510614--510717	24	4.3	24	87	0	127	21	31	13	33	1.92
518007--518102	3	32.0	3	93	0	156	62	0	1	36	1.02
518381--518484	41	2.7	38	84	11	140	21	24	7	47	1.76
518519--518621	41	2.5	40	84	3	143	23	20	6	49	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518360--518735	142	2.6	149	85	7	504	27	19	11	41	1.85
518562--518998	113	3.9	113	94	1	734	32	18	11	37	1.87
519676--519889	114	1.9	114	97	0	401	30	16	15	36	1.91
519824--520046	83	2.7	84	88	2	308	38	21	12	27	1.89
521192--521274	9	9.3	9	76	17	84	0	16	0	83	0.65
521193--521277	23	3.7	23	86	10	120	0	17	0	82	0.67
534081--534194	3	38.0	3	92	0	192	63	0	2	34	1.09
536512--536643	40	3.1	42	76	18	139	44	2	2	50	1.26
536668--536810	40	3.5	40	71	16	128	53	2	2	41	1.27
536704--536743	16	2.4	17	91	4	64	57	0	0	42	0.98
536692--536807	41	2.7	44	76	14	132	53	2	2	41	1.28
537116--537240	61	2.0	61	92	0	205	25	8	24	41	1.82
538588--538627	14	2.9	14	88	7	55	40	27	7	25	1.82
540446--540577	40	3.1	42	76	18	139	44	2	2	50	1.26
540644--540675	16	2.0	16	100	0	64	56	0	0	43	0.99
541042--541166	61	2.0	61	92	0	205	25	8	24	41	1.82
542429--542460	4	8.0	4	92	0	55	71	3	0	25	1.00
542511--542550	14	2.9	14	88	7	55	40	27	7	25	1.82
552992--553093	34	2.9	36	86	5	154	44	12	12	30	1.80
553405--553457	24	2.3	23	80	9	63	20	5	3	69	1.25
553522--553579	29	2.0	29	86	6	82	24	3	0	72	1.00
553499--553588	35	2.4	37	85	7	121	28	2	0	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553612--553643	9	3.6	9	95	0	55	3	15	0	81	0.82
553572--553668	21	4.8	20	71	17	67	16	7	1	75	1.08
553640--553716	23	3.4	23	73	19	65	15	9	2	72	1.20
553735--553764	15	2.0	15	100	0	60	20	20	0	60	1.37
556708--556798	15	6.1	15	72	17	57	74	9	14	1	1.12
557421--557470	22	2.3	22	93	3	84	34	28	12	26	1.92
557421--557481	22	2.8	21	87	5	59	36	29	11	22	1.90
558331--558434	36	2.9	36	90	4	156	25	24	13	37	1.91
558329--558632	36	9.0	35	69	19	146	30	20	12	36	1.90
558349--558660	99	3.1	99	90	4	459	31	20	11	36	1.89
558548--558801	36	7.4	35	72	16	126	30	18	11	39	1.86
558615--558673	30	2.0	30	86	6	84	40	16	10	32	1.82
558687--558801	36	3.1	36	82	4	158	30	19	11	39	1.86
558843--558954	32	3.5	32	89	8	149	35	19	11	33	1.88
558910--559056	66	2.2	65	86	3	197	27	21	12	38	1.90
559580--560409	105	8.0	105	91	2	1291	33	26	17	22	1.96
560955--561054	34	2.8	36	92	6	168	44	14	13	29	1.82
560952--561065	37	3.2	37	86	7	162	42	14	13	29	1.84
561358--561425	23	3.3	21	71	19	54	22	5	4	67	1.30
561372--561417	24	2.0	23	83	12	58	19	6	4	69	1.28
561414--561561	42	3.5	42	75	13	135	30	2	1	66	1.11
561408--561560	40	3.7	41	78	10	127	30	1	1	66	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561488--561551	32	2.0	33	84	9	87	26	3	0	70	1.02
561500--561583	19	4.3	18	75	21	64	21	2	1	75	0.99
561484--561558	36	2.1	36	82	9	91	28	2	0	69	1.02
561582--561607	9	2.9	9	100	0	52	0	19	0	80	0.71
563860--563910	14	3.4	14	76	23	59	5	13	27	52	1.63
564231--564276	24	2.0	24	83	12	60	39	6	4	50	1.48
564236--564281	24	1.9	24	86	8	67	36	6	4	52	1.47
565897--565957	3	20.3	3	93	0	104	32	0	3	63	1.10
565999--566068	18	3.7	19	75	9	63	57	0	1	41	1.08
567722--567762	2	20.5	2	94	0	73	51	2	0	46	1.14
568019--568073	2	28.5	2	78	7	60	50	0	0	49	1.00
568034--568127	10	9.3	10	71	15	59	51	0	0	48	1.00
568032--568067	17	2.1	17	89	0	54	52	0	0	47	1.00
570061--570098	14	2.7	14	91	0	67	18	13	10	57	1.63
570069--570118	24	2.1	23	92	3	82	14	14	12	60	1.60
570247--570300	27	2.0	26	85	3	72	9	11	18	61	1.55
571597--572341	134	5.5	134	83	2	866	31	22	16	29	1.96
577216--577317	26	4.0	25	77	12	73	69	1	2	25	1.13
577224--577412	9	20.6	9	71	24	82	74	2	2	20	1.04
577280--577413	17	6.6	20	77	15	93	76	1	2	18	0.99
577222--577407	97	1.9	97	84	10	247	73	2	3	20	1.08
577263--577413	9	16.1	9	71	15	92	76	2	2	18	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577462--577490	13	2.2	13	100	0	58	86	0	0	13	0.58
578744--579042	81	3.7	78	79	7	278	26	20	23	30	1.98
579165--579257	37	2.5	36	84	6	107	34	13	19	32	1.91
580845--580929	38	2.3	37	84	8	102	5	11	3	78	1.04
580845--580929	18	4.6	18	76	15	75	5	11	3	78	1.04
580879--580943	19	3.3	19	77	12	69	4	13	1	80	0.95
580845--580901	26	2.1	27	80	3	62	5	12	3	78	1.03
580879--580948	26	2.7	25	78	8	68	4	14	2	78	1.02
580912--580949	14	2.6	15	83	4	51	0	18	5	76	0.97
582351--582386	10	3.6	10	96	0	63	11	27	0	61	1.30
584017--584204	8	22.0	8	67	18	60	73	2	3	20	1.09
584018--584164	24	5.9	25	74	18	87	74	2	3	19	1.09
584034--584158	14	9.8	13	68	19	61	72	2	4	20	1.12
583995--584178	12	14.4	13	68	21	79	73	2	4	20	1.11
584127--584195	30	2.3	30	85	7	86	72	0	4	23	1.02
584252--584291	14	2.9	14	85	7	55	85	0	0	15	0.61
590233--590273	21	2.0	21	95	0	73	36	0	12	51	1.40
591755--591796	4	11.2	4	85	14	63	23	0	0	76	0.79
591757--591792	18	2.0	18	100	0	72	22	0	0	77	0.76
591755--591822	22	3.3	21	83	6	86	23	4	0	72	1.03
591938--592000	5	12.8	5	79	12	51	17	4	3	74	1.12
591940--592013	29	2.6	30	80	6	73	17	4	4	74	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591938--592000	20	3.2	20	78	15	60	17	4	3	74	1.12
602714--603003	63	4.6	63	84	1	325	31	18	13	36	1.89
602742--603003	126	2.1	125	88	2	391	31	18	13	36	1.90
603370--603638	35	7.7	35	88	0	378	41	15	22	20	1.90
603370--603638	139	1.9	139	88	0	403	41	15	22	20	1.90
603839--603885	3	15.7	3	86	8	69	34	0	2	63	1.06
605005--605033	14	2.0	15	93	6	51	37	0	0	62	0.96
609039--609082	23	1.9	23	90	0	70	27	22	11	38	1.88
610909--610995	3	29.7	3	93	4	151	64	0	0	35	0.94
611352--612228	53	17.0	53	77	5	776	30	15	22	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11