genome.fa.s8973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008973.1 Hibiscus syriacus cultivar Beakdansim tig00112319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2070395

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  1  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--45	17	1.9	18	88	5	52	38	0	17	44	1.49
24--60	11	3.4	11	96	0	65	37	0	16	45	1.47
12--65	18	3.0	18	84	10	58	37	0	18	44	1.50
172--240	27	2.4	27	83	9	75	40	7	7	44	1.60
172--210	15	2.6	15	79	0	51	38	12	7	41	1.72
183--268	30	3.0	28	79	6	75	37	5	10	46	1.62
948--1014	27	2.5	27	100	0	134	47	0	0	52	1.00
939--1030	27	3.5	26	88	8	125	45	1	3	50	1.25
948--1014	2	34.5	2	94	5	120	47	0	0	52	1.00
1243--1306	29	2.2	28	81	13	76	46	4	6	42	1.49
1257--1303	18	2.6	18	86	0	58	42	2	8	46	1.46
1300--1347	22	2.2	22	85	7	62	45	8	4	41	1.53
1425--1482	2	31.0	2	77	19	63	48	0	1	50	1.11
3727--3774	20	2.5	18	83	12	60	22	27	18	31	1.97
3727--3775	19	2.5	21	87	9	68	22	28	18	30	1.97
5878--5909	15	2.1	15	94	0	55	37	9	6	46	1.61
6154--6594	180	2.4	179	79	9	425	39	9	11	39	1.74
7508--7577	12	5.8	12	73	6	61	15	14	17	52	1.74
7509--7581	24	3.0	24	77	0	92	17	12	16	53	1.73
7471--7581	48	2.3	48	83	6	127	19	15	16	48	1.81
7737--7775	2	19.5	2	100	0	78	48	0	0	51	1.00
8117--8158	22	2.0	21	86	13	59	64	7	0	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9648--9738	32	2.9	31	79	14	80	52	8	7	30	1.60
9819--9861	19	2.2	19	83	8	50	39	6	9	44	1.64
15140--15198	8	8.4	8	69	27	53	25	15	37	22	1.93
15140--15214	20	3.8	20	94	3	116	25	16	36	22	1.94
15180--15244	32	2.0	32	93	0	112	27	16	29	26	1.97
15144--15242	12	8.2	12	70	23	57	26	15	34	24	1.94
15307--15364	21	2.8	21	94	0	98	20	18	37	22	1.94
15330--15354	13	1.9	13	100	0	50	24	20	32	24	1.98
15444--15502	30	2.0	29	93	3	100	44	11	6	37	1.68
19405--19448	22	2.0	23	86	4	63	31	27	11	29	1.91
19593--19627	2	17.5	2	100	0	70	48	0	0	51	1.00
20410--20461	7	7.7	7	97	2	90	15	26	15	42	1.87
25870--25933	20	2.9	22	84	9	78	25	25	18	31	1.98
27878--27925	3	17.0	3	83	12	57	31	0	2	66	1.03
27868--27912	22	2.0	23	91	4	74	24	0	4	71	1.05
27878--27929	14	3.8	14	77	7	54	32	0	1	65	1.04
31403--31467	30	2.2	30	85	0	94	38	15	26	20	1.92
31665--31702	7	5.3	7	87	6	58	13	15	10	60	1.59
31665--31702	15	2.6	14	91	4	58	13	15	10	60	1.59
31773--31850	34	2.3	35	82	10	90	19	12	5	62	1.48
34387--34421	17	2.1	17	88	0	52	71	0	20	8	1.11
35046--35106	32	1.9	32	93	0	104	44	18	16	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39601--39908	113	2.7	114	86	3	408	38	13	20	27	1.91
40397--40446	3	18.0	3	80	15	54	32	0	2	66	1.03
40401--40444	16	2.8	16	82	0	52	31	0	2	65	1.05
40393--40446	19	2.9	18	78	8	63	31	0	1	66	1.02
41871--41899	15	1.9	15	100	0	58	31	0	6	62	1.22
49250--49311	24	2.6	24	97	0	115	43	1	32	22	1.63
50916--50960	19	2.4	19	88	7	65	60	0	0	40	0.97
51353--51412	12	4.5	13	71	24	54	63	0	1	35	1.05
51353--51407	19	2.9	18	73	21	51	63	0	1	34	1.05
54802--55001	96	2.1	96	87	0	292	40	18	15	26	1.90
62299--62351	21	2.4	23	76	17	58	50	0	3	45	1.19
62371--62483	50	2.2	51	76	14	117	50	0	1	46	1.17
66912--66950	21	1.9	21	89	5	62	17	25	23	33	1.96
66913--67011	10	10.3	9	75	12	72	16	27	27	29	1.97
66912--67005	19	4.8	19	72	15	68	17	25	27	29	1.97
66973--67009	19	1.9	19	100	0	74	10	27	35	27	1.90
66972--67011	9	4.3	9	84	6	53	12	30	32	25	1.92
67007--67045	17	2.3	17	95	0	69	17	43	23	15	1.87
74139--74223	20	4.3	20	80	8	88	17	25	27	29	1.98
74160--74229	10	7.3	10	71	19	60	15	28	28	27	1.96
74139--74227	19	4.6	20	83	12	91	17	25	26	29	1.98
74228--74264	18	2.1	18	100	0	74	16	51	21	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76133--76184	23	2.3	23	96	0	95	53	9	7	28	1.61
77938--78016	16	4.6	16	75	17	70	39	10	25	25	1.87
77951--78025	33	2.3	33	92	0	132	37	8	28	26	1.84
77933--78008	20	4.3	17	77	14	66	39	9	27	23	1.85
81741--81768	13	2.2	13	100	0	56	28	17	7	46	1.75
81906--81954	11	4.5	11	74	5	55	20	2	16	61	1.44
83840--83888	11	4.5	11	82	5	64	18	2	18	61	1.45
90547--90580	15	2.3	15	94	0	59	14	20	11	52	1.73
92063--92097	18	1.9	18	100	0	70	17	48	22	11	1.79
99225--99277	18	2.9	18	100	0	106	16	49	22	11	1.78
106046--106115	36	1.9	37	88	2	106	38	14	7	40	1.73
106037--106113	17	4.4	17	76	11	66	37	15	6	40	1.73
114582--114635	3	18.3	3	96	3	101	68	0	0	31	0.90
115176--115271	40	2.4	40	87	0	138	54	18	4	22	1.61
119052--119655	6	102.2	6	95	4	1104	49	17	0	32	1.48
119954--120019	2	33.0	2	88	11	100	46	3	0	50	1.16
123508--123588	30	2.7	30	94	3	137	61	17	0	20	1.34
123506--123618	15	7.5	15	73	8	86	61	15	2	19	1.45
123576--123625	16	3.2	15	85	2	64	66	12	8	14	1.45
126399--126633	102	2.3	102	79	4	242	27	15	22	34	1.94
131275--131339	32	2.0	32	84	0	85	20	21	27	30	1.98
132830--132863	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132959--133009	2	25.5	2	100	0	102	50	0	0	49	1.00
133445--133566	58	2.1	58	83	10	151	36	13	14	36	1.85
134059--134118	31	1.9	31	100	0	120	48	0	23	28	1.51
134177--134213	18	2.1	18	100	0	74	21	29	5	43	1.75
134827--134860	17	2.0	17	94	0	59	17	2	0	79	0.86
134824--134860	9	4.2	9	86	6	58	18	2	0	78	0.87
137603--137627	12	2.1	12	100	0	50	8	16	40	36	1.77
144983--145727	231	3.2	231	85	4	925	34	15	15	34	1.89
145905--146362	134	3.4	134	78	4	485	32	21	15	31	1.94
146522--146583	3	20.7	3	79	12	56	33	1	0	64	1.03
146524--146555	16	2.0	16	93	0	55	40	0	0	59	0.97
146522--146584	26	2.5	26	85	12	78	33	1	0	65	1.03
146545--146601	14	3.9	14	77	11	53	24	5	0	70	1.08
155661--155693	14	2.4	14	100	0	66	51	0	21	27	1.48
156573--156638	23	3.0	22	76	14	73	22	19	27	30	1.98
164408--164443	16	2.2	16	100	0	72	50	0	30	19	1.48
180479--180517	21	1.9	20	85	15	53	51	0	2	46	1.14
182711--182746	16	2.1	18	90	10	58	41	0	0	58	0.98
182710--182785	38	2.0	38	82	5	91	43	0	2	53	1.14
186082--186135	28	2.0	27	82	10	65	61	3	7	27	1.40
186104--186567	209	2.2	209	91	3	732	51	7	12	28	1.67
186672--186835	2	82.5	2	68	18	85	47	3	3	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186779--186861	9	9.4	9	70	19	52	46	8	2	42	1.47
186779--186835	11	5.4	11	79	8	55	47	5	1	45	1.35
186808--186855	20	2.5	20	89	3	71	45	10	4	39	1.58
186879--186937	31	1.9	31	82	0	73	45	8	6	38	1.61
186976--187023	22	2.2	22	85	7	62	43	4	2	50	1.33
187389--187489	2	51.0	2	92	5	170	48	0	0	50	1.07
187906--187937	2	16.0	2	100	0	64	50	0	0	50	1.00
187927--187998	33	2.2	32	85	11	94	54	0	0	45	0.99
188303--188367	7	9.3	7	81	0	67	16	0	30	52	1.45
188303--188367	14	4.6	14	81	7	78	16	0	30	52	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11