genome.fa.s8973.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008973.1 Hibiscus syriacus cultivar Beakdansim tig00112319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2070395

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1340503--1340751	55	4.5	55	85	2	313	34	10	14	40	1.80
1340503--1340737	109	2.1	110	88	2	357	35	10	13	40	1.79
1340524--1341010	55	9.2	52	75	10	219	33	9	16	40	1.81
1340754--1341010	53	4.9	53	72	15	185	33	9	17	40	1.82
1341071--1341142	20	3.5	20	75	14	74	23	20	20	34	1.96
1341094--1341164	22	3.3	22	71	15	67	25	19	18	36	1.94
1341074--1341207	42	3.2	42	89	1	189	23	19	22	34	1.97
1341321--1341591	73	3.7	73	83	5	325	32	20	11	36	1.88
1341309--1341518	36	5.7	37	69	11	146	31	19	11	37	1.87
1341307--1341564	37	7.0	36	68	8	144	31	20	11	37	1.88
1341320--1341591	146	1.9	145	85	3	377	31	20	11	36	1.88
1341855--1342258	139	2.9	138	89	4	598	38	16	18	26	1.92
1342208--1342299	48	1.9	48	97	0	175	32	20	13	33	1.91
1342069--1342437	187	2.0	183	89	3	569	36	16	17	30	1.92
1342256--1342536	137	2.0	137	86	4	386	36	16	18	27	1.93
1342591--1342699	42	2.6	42	86	1	139	34	20	14	30	1.92
1342892--1342939	14	3.6	12	79	20	51	41	0	0	58	0.98
1342893--1342944	19	2.8	18	79	5	59	40	0	0	59	0.97
1343098--1343214	53	2.2	53	89	0	180	29	41	13	15	1.85
1343987--1344011	13	1.9	13	100	0	50	80	0	0	20	0.72
1346275--1346305	11	2.8	11	100	0	62	29	16	45	9	1.79
1347005--1347043	21	1.9	21	94	5	71	7	15	2	74	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1349750--1349792	15	2.9	15	85	0	59	48	11	9	30	1.71
1354469--1354504	18	1.9	18	88	5	54	52	2	0	44	1.15
1359065--1360122	114	9.4	114	79	5	903	35	13	9	41	1.77
1359068--1360122	338	3.1	335	79	4	976	35	13	9	41	1.77
1359068--1360122	226	4.7	225	79	4	955	35	13	9	41	1.77
1361639--1361688	22	2.3	22	89	0	73	40	16	18	26	1.90
1363498--1363544	18	2.6	18	96	0	85	23	31	12	31	1.92
1366638--1366778	54	2.6	53	87	3	176	26	13	24	35	1.93
1366657--1366778	54	2.3	54	91	0	190	27	12	24	36	1.91
1374989--1375048	21	2.9	21	97	0	111	23	21	25	30	1.99
1375033--1375425	193	2.0	191	92	0	651	27	16	23	33	1.95
1375363--1375484	54	2.3	54	89	0	190	30	11	24	33	1.91
1378033--1378177	20	6.7	20	73	16	110	20	23	11	44	1.84
1378026--1378157	46	2.9	45	89	1	192	20	21	11	46	1.82
1380811--1380849	20	2.1	18	86	13	53	41	20	10	28	1.85
1397314--1397348	18	1.9	18	88	0	52	60	0	11	28	1.32
1397813--1397844	2	16.0	2	100	0	64	50	0	0	50	1.00
1398501--1398592	48	1.9	48	84	0	121	22	14	13	50	1.77
1398522--1398592	24	3.0	24	74	0	70	22	11	14	52	1.73
1402684--1402719	2	18.0	2	100	0	72	50	0	0	50	1.00
1408592--1408639	20	2.4	20	86	6	62	35	18	22	22	1.96
1409340--1409390	22	2.3	22	86	3	66	27	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1410480--1410537	23	2.6	21	81	13	55	25	1	1	70	1.06
1413926--1413972	19	2.5	19	96	0	85	25	12	34	27	1.92
1415918--1416007	33	2.7	34	94	3	164	36	24	16	22	1.94
1417895--1417919	13	1.9	13	100	0	50	16	20	8	56	1.65
1420758--1420802	16	2.8	17	86	10	67	24	26	4	44	1.72
1422941--1423025	28	3.0	29	78	3	91	21	24	15	38	1.92
1422924--1423020	29	3.4	29	78	2	97	22	24	12	40	1.89
1423809--1423851	17	2.5	18	85	7	54	67	0	4	27	1.10
1423810--1423851	21	2.0	21	81	9	50	69	0	4	26	1.08
1427178--1427242	6	10.8	6	74	9	53	73	4	1	20	1.08
1430090--1430130	18	2.3	19	87	8	59	60	0	7	31	1.24
1437038--1437083	17	2.6	18	89	6	76	21	23	17	36	1.94
1437358--1437534	90	2.0	89	92	1	291	45	6	10	37	1.64
1450110--1450211	24	4.2	24	80	0	114	20	10	14	53	1.70
1450108--1450211	48	2.2	48	83	0	127	21	10	14	53	1.70
1452267--1452304	19	2.0	19	89	0	58	18	26	26	28	1.98
1452321--1452354	17	2.0	17	88	0	50	17	23	29	29	1.97
1454542--1454629	24	3.7	24	85	0	95	20	11	17	51	1.75
1454538--1454629	48	1.9	48	84	0	121	19	11	17	51	1.76
1463265--1463317	21	2.5	21	81	0	70	20	22	18	37	1.94
1463307--1463408	41	2.5	40	83	1	123	39	17	19	23	1.92
1463307--1463416	20	5.4	20	80	2	130	38	18	20	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463410--1463474	20	3.2	20	84	4	87	32	24	18	24	1.97
1464535--1464561	3	9.0	3	100	0	54	66	0	33	0	0.92
1466171--1466239	20	3.5	20	84	4	86	37	23	21	17	1.94
1466234--1466306	33	2.2	33	90	2	110	43	17	24	13	1.86
1466343--1466396	14	3.5	14	73	22	54	11	24	20	44	1.83
1466321--1466396	33	2.3	34	95	2	136	11	22	19	46	1.82
1466321--1466416	33	2.8	33	89	6	122	12	21	20	44	1.85
1467938--1468049	42	2.7	42	80	5	120	22	17	38	21	1.93
1468529--1468637	20	5.4	20	87	0	128	38	22	18	21	1.93
1468696--1468802	20	5.7	20	79	12	120	16	22	19	41	1.90
1470661--1470715	20	2.8	20	91	0	83	49	23	16	10	1.77
1470663--1470732	20	3.5	20	88	0	77	42	25	15	15	1.87
1471100--1471175	22	3.5	22	77	0	80	23	17	34	25	1.96
1471345--1471496	40	3.8	40	87	4	191	23	21	20	35	1.96
1471343--1471496	20	7.7	20	81	5	150	24	20	20	35	1.96
1471493--1471538	21	2.2	21	92	0	74	39	17	26	17	1.91
1473850--1473895	18	2.7	18	86	6	60	15	15	4	65	1.43
1475739--1475812	27	2.7	27	82	2	94	43	18	12	25	1.85
1500286--1500323	17	2.2	17	86	9	51	10	10	13	65	1.47
1502507--1502634	52	2.4	55	84	7	181	42	14	21	21	1.87
1503310--1503441	70	1.9	68	95	3	237	34	14	26	24	1.94
1507223--1507256	17	2.1	16	88	5	50	14	8	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513592--1513634	20	2.1	21	87	8	63	18	13	0	67	1.23
1513591--1513640	20	2.5	20	75	15	59	18	18	0	64	1.30
1516544--1516577	17	2.1	16	88	5	50	14	8	0	76	1.01
1518824--1518906	42	2.0	42	85	4	114	28	16	19	34	1.94
1518945--1518969	13	1.9	13	100	0	50	32	24	20	24	1.98
1518959--1519361	42	9.4	42	77	7	373	28	19	20	32	1.97
1519164--1519188	13	1.9	13	100	0	50	32	24	20	24	1.98
1518810--1519298	219	2.2	219	89	0	755	29	18	20	31	1.96
1519188--1519295	22	5.1	22	68	8	98	28	18	16	36	1.93
1519783--1520274	53	9.2	53	82	2	556	31	21	25	21	1.98
1523327--1523415	43	2.1	43	91	0	142	14	34	14	35	1.87
1532966--1533033	35	1.9	35	90	0	109	42	17	13	26	1.86
1536113--1536142	2	15.0	2	100	0	60	50	0	0	50	1.00
1543538--1543577	20	2.0	20	85	9	55	35	25	2	37	1.69
1550919--1550995	17	4.4	17	83	6	100	15	23	42	18	1.88
1550944--1550992	19	2.4	20	90	10	73	8	22	48	20	1.75
1550966--1550993	14	2.0	14	100	0	56	7	21	50	21	1.72
1550989--1551041	19	2.8	19	97	0	97	24	32	26	16	1.97
1550989--1551058	9	7.3	9	75	12	59	25	30	27	17	1.97
1550991--1551043	10	5.5	10	80	8	65	28	32	22	16	1.96
1551626--1551699	34	2.2	34	100	0	148	21	13	24	40	1.89
1553166--1553247	23	3.7	23	85	3	105	31	15	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1553150--1553247	46	2.2	45	83	3	117	28	18	22	30	1.97
1557676--1557715	21	2.0	21	85	5	55	35	12	22	30	1.91
1558570--1558704	23	6.0	23	86	4	159	29	17	24	28	1.97
1561044--1561108	32	2.1	32	85	2	87	32	3	10	53	1.51
1561381--1561440	31	1.9	31	93	0	102	33	8	16	41	1.78
1562530--1562569	21	1.9	21	84	0	53	25	27	12	35	1.92
1565491--1565645	55	2.8	55	90	2	233	34	18	16	30	1.93
1571779--1571824	19	2.4	19	100	0	92	45	4	6	43	1.49
1576952--1577443	38	13.5	37	83	11	489	45	3	7	43	1.47
1577070--1577122	27	2.0	27	85	7	72	47	3	7	41	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11