genome.fa.s8973.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008973.1 Hibiscus syriacus cultivar Beakdansim tig00112319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2070395

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2024908--2025000	21	4.6	20	78	4	96	38	18	24	18	1.92
2024905--2025000	41	2.3	41	98	0	183	39	17	23	18	1.92
2024908--2025000	20	4.6	20	78	4	96	38	18	24	18	1.92
2024927--2025061	41	3.3	41	81	6	123	37	20	21	20	1.94
2024989--2025082	20	4.7	20	78	2	80	34	23	18	24	1.96
2025601--2025681	19	4.5	19	73	16	73	46	24	17	11	1.80
2025677--2025861	19	10.1	19	75	14	156	12	21	21	43	1.86
2025677--2025861	33	5.1	38	78	12	156	12	21	21	43	1.86
2025805--2025861	20	2.8	20	79	10	62	15	22	17	43	1.87
2027920--2027986	21	3.2	21	66	6	55	23	35	20	19	1.95
2027864--2027986	42	2.9	42	80	4	106	22	36	17	23	1.94
2029345--2029380	14	2.6	14	95	0	63	30	0	25	44	1.54
2029519--2029563	19	2.3	20	81	7	58	44	20	17	17	1.87
2029563--2029755	33	5.9	32	84	9	255	15	21	19	43	1.87
2029556--2029754	66	3.0	66	95	0	353	16	21	19	42	1.89
2032048--2032072	12	2.1	12	100	0	50	0	28	0	72	0.86
2032247--2032300	24	2.2	24	90	0	81	38	20	16	24	1.92
2033360--2033417	20	2.9	20	94	0	98	37	22	22	17	1.93
2033436--2033522	19	4.8	19	90	9	139	13	21	17	47	1.82
2033436--2033551	33	3.4	33	84	11	151	13	22	19	43	1.86
2035540--2035606	19	3.5	19	83	4	89	37	23	23	14	1.93
2035595--2035652	14	3.9	14	79	16	71	48	25	17	8	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035579--2035657	32	2.4	33	95	2	142	46	24	18	10	1.80
2035686--2035743	14	3.9	14	77	16	62	10	15	24	50	1.75
2035669--2035759	32	2.8	33	88	3	139	12	16	21	49	1.78
2035745--2035787	20	2.2	20	83	4	52	20	23	18	37	1.94
2036271--2036315	18	2.5	18	85	0	63	15	15	42	26	1.87
2037635--2037672	20	1.9	20	88	0	58	50	21	15	13	1.78
2037922--2037965	22	2.0	22	95	0	79	20	13	43	22	1.87
2038153--2038246	20	4.7	20	80	2	89	23	18	24	34	1.96
2038133--2038247	20	5.7	20	78	5	88	23	17	23	35	1.95
2038175--2038309	41	3.3	41	81	4	130	20	21	20	37	1.94
2038236--2038328	20	4.6	20	78	4	96	18	24	18	38	1.92
2038236--2038331	41	2.3	41	98	0	183	18	23	17	39	1.92
2038782--2039189	200	2.1	198	85	3	552	30	15	15	39	1.88
2039499--2039554	24	2.4	23	83	16	80	57	3	0	39	1.16
2039554--2039994	200	2.2	198	87	4	624	30	14	14	40	1.86
2040095--2040181	30	2.9	29	80	17	90	49	0	1	49	1.08
2040207--2040275	24	2.9	25	79	18	76	43	1	2	52	1.25
2046775--2046846	26	3.0	24	68	27	62	26	6	4	62	1.39
2057288--2057329	16	2.5	17	78	21	61	28	30	4	35	1.78
2061281--2061319	20	2.0	20	89	0	60	30	33	15	20	1.94
2061339--2061429	46	2.0	46	93	2	157	27	26	19	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!