genome.fa.s8973.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008973.1 Hibiscus syriacus cultivar Beakdansim tig00112319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2070395

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244705--245660	462	2.0	459	85	8	1254	37	8	12	41	1.73
245888--245936	7	7.0	7	81	9	55	18	0	28	53	1.45
246016--246067	15	3.4	15	91	2	86	40	1	7	50	1.42
245167--247024	545	3.3	556	88	5	2689	34	10	12	42	1.76
246592--246632	20	2.1	19	86	4	55	39	4	7	48	1.52
247121--247170	25	2.0	25	84	0	64	26	18	22	34	1.96
249139--249206	24	2.8	24	79	0	82	14	13	16	55	1.69
249140--249204	12	5.4	12	72	7	60	12	13	16	56	1.66
252834--252895	12	5.2	12	71	7	54	14	16	17	51	1.76
252826--252897	24	3.0	24	75	0	81	18	15	16	50	1.79
254979--255058	32	2.5	32	93	4	135	28	27	20	23	1.99
256454--256506	26	2.0	26	85	0	70	35	16	20	26	1.94
260422--260474	26	2.0	26	82	7	63	41	15	16	26	1.88
261492--261548	12	4.8	12	75	0	51	17	8	19	54	1.68
262721--262780	3	20.0	3	76	6	59	35	1	3	60	1.23
264929--264961	6	5.7	6	85	7	50	21	0	0	78	0.75
264929--264961	17	1.9	17	93	0	57	21	0	0	78	0.75
264929--264959	11	2.7	11	95	5	53	19	0	0	80	0.71
271841--271938	36	2.7	36	79	3	108	23	18	28	29	1.98
273442--273494	22	2.4	21	84	9	79	33	15	13	37	1.86
273854--274309	113	4.0	113	83	7	532	38	13	18	28	1.90
276024--276282	140	1.8	139	83	7	344	38	7	6	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276679--276858	57	3.2	55	75	15	170	50	18	2	28	1.61
276720--276826	27	3.7	29	80	9	85	51	17	2	28	1.60
278972--279041	12	5.8	12	76	6	70	51	18	14	15	1.77
278970--279064	24	4.0	24	80	2	102	49	17	13	18	1.79
278970--279076	48	2.2	48	83	6	119	50	17	13	18	1.78
279920--280117	29	7.0	28	84	8	215	31	1	17	50	1.55
279920--280117	85	2.3	85	82	10	242	31	1	17	50	1.55
281051--281255	42	4.8	42	88	7	283	18	25	23	32	1.97
287862--287932	29	2.5	28	77	8	81	50	8	1	39	1.41
287922--287980	28	2.1	29	87	3	84	49	11	3	35	1.56
290132--290200	24	2.9	24	80	0	84	50	17	14	17	1.78
290135--290196	12	5.3	11	74	14	52	51	17	12	17	1.76
290136--290223	24	3.6	25	77	6	83	48	17	12	21	1.79
292623--292807	29	6.6	29	77	12	143	51	12	2	33	1.52
292821--292869	13	4.0	13	74	15	59	16	20	44	18	1.86
294224--294317	3	31.7	3	95	2	172	31	0	0	68	0.90
294409--294454	8	5.5	8	94	5	74	32	0	0	67	0.91
294409--294461	9	6.1	9	95	2	83	32	0	0	67	0.91
294717--294814	48	2.0	49	80	5	110	61	1	1	36	1.10
297435--297543	24	4.5	24	72	6	87	50	15	11	22	1.76
300548--300795	123	2.0	123	86	4	349	31	14	14	38	1.87
301193--301550	153	2.3	158	82	5	442	28	17	6	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301193--301575	158	2.5	153	79	5	342	28	17	6	47	1.71
304188--304242	3	18.7	3	89	10	87	32	0	0	67	0.91
305594--305628	3	11.7	3	93	0	61	34	0	2	62	1.10
306426--306490	28	2.2	30	78	10	80	32	4	1	61	1.26
306442--306477	18	1.9	19	88	5	56	33	2	0	63	1.08
309701--309732	15	2.1	15	94	0	55	25	18	9	46	1.79
318614--319059	113	3.9	113	85	4	612	38	14	19	27	1.91
318645--319059	227	1.8	226	90	3	674	38	14	20	27	1.91
320764--320947	32	5.8	32	84	6	250	34	19	18	27	1.95
320764--320947	93	2.0	94	85	4	255	34	19	18	27	1.95
320771--320947	63	2.8	64	90	3	270	34	19	19	27	1.95
322734--322806	33	2.2	33	97	2	137	54	0	5	39	1.23
323652--323732	25	3.4	24	77	14	60	43	4	0	51	1.23
323673--323732	22	2.6	23	84	10	86	43	5	0	51	1.23
323662--323748	25	3.4	25	83	15	92	43	3	0	52	1.18
337068--337107	8	5.1	8	81	6	55	35	0	27	37	1.57
337067--337107	15	2.7	15	80	3	55	34	0	26	39	1.57
337188--337793	128	4.7	128	94	1	1081	20	24	21	33	1.97
338158--338264	34	3.1	34	85	5	144	37	2	4	55	1.36
338785--338878	21	4.5	21	82	7	120	23	27	30	18	1.97
338882--338929	21	2.3	21	85	0	60	22	12	39	25	1.89
340654--340733	34	2.4	33	81	8	92	60	1	0	38	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342061--342128	30	2.2	31	81	2	75	25	19	2	52	1.59
346925--346955	6	5.2	6	92	0	53	48	3	16	32	1.62
347776--347825	20	2.5	20	86	0	64	28	26	20	26	1.99
347673--347905	119	2.0	119	95	0	421	32	16	18	31	1.94
348143--348191	12	4.3	11	82	10	62	38	2	0	59	1.09
366246--366345	50	2.0	50	100	0	200	24	26	12	38	1.90
370983--371075	45	2.0	46	91	2	152	23	10	16	49	1.76
370983--371116	45	2.8	45	83	8	144	26	12	14	46	1.81
373959--374078	46	2.6	46	80	5	116	25	20	25	29	1.99
374113--374310	46	4.3	46	80	1	209	24	17	26	30	1.97
373974--374325	139	2.5	137	77	5	332	26	17	25	31	1.97
375046--375097	20	2.5	20	84	3	68	50	1	3	44	1.31
375169--375232	25	2.6	25	80	7	69	43	4	9	42	1.57
375170--375291	59	2.0	61	83	10	153	45	5	8	40	1.58
375243--375291	24	2.0	24	84	8	62	44	8	8	38	1.64
375319--375371	3	17.3	3	90	3	61	26	1	5	66	1.25
383020--383052	13	2.4	14	90	5	50	18	3	3	75	1.06
382933--383097	76	2.2	77	87	3	246	30	1	10	56	1.44
382955--383118	75	2.1	77	87	7	244	28	1	10	59	1.39
383746--383786	21	1.9	22	90	5	66	19	4	0	75	0.98
390953--391137	51	3.6	51	83	4	246	27	24	16	31	1.96
390952--391139	103	1.8	103	90	4	308	28	24	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391125--391476	54	6.5	54	90	1	562	19	25	19	36	1.94
391849--391972	37	3.4	37	85	2	142	25	16	21	35	1.95
393204--393429	125	1.8	125	89	0	353	26	26	16	30	1.96
396640--396790	72	2.1	72	92	0	248	24	27	11	36	1.90
397451--397636	55	3.4	55	90	1	268	20	20	13	44	1.85
397474--397638	55	3.0	55	93	0	285	22	21	10	44	1.83
397924--398040	47	2.5	46	77	13	121	37	20	11	30	1.87
402716--402744	6	4.8	6	100	0	58	0	0	13	86	0.58
404613--404777	76	2.2	75	86	3	233	30	2	10	56	1.45
404735--404797	19	3.2	19	75	4	54	31	0	12	55	1.37
407949--408024	13	5.3	13	75	17	62	17	44	21	17	1.86
407927--408003	18	4.6	18	81	15	110	18	50	19	11	1.77
407931--408009	31	2.5	31	91	0	140	17	48	20	13	1.81
407985--408031	8	6.5	8	77	22	59	14	38	25	21	1.92
408001--408032	7	4.4	7	92	7	55	12	34	28	25	1.92
407985--408031	15	3.3	15	91	5	71	14	38	25	21	1.92
409344--409379	18	2.0	18	88	0	54	52	0	16	30	1.44
410448--410547	24	4.2	24	71	5	85	24	13	16	47	1.81
412712--412787	13	5.3	13	75	17	62	17	44	21	17	1.86
412690--412766	18	4.6	18	81	15	110	18	50	19	11	1.77
412694--412772	31	2.5	31	91	0	140	17	48	20	13	1.81
412748--412794	8	6.5	8	77	22	59	14	38	25	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412764--412795	7	4.4	7	92	7	55	12	34	28	25	1.92
412748--412794	15	3.3	15	91	5	71	14	38	25	21	1.92
414106--414141	18	2.0	18	88	0	54	52	0	16	30	1.44
415210--415309	24	4.2	24	71	5	85	24	13	16	47	1.81
422649--422843	75	2.6	75	81	1	203	53	12	5	28	1.61
424396--424457	3	21.0	3	77	9	65	41	0	0	58	0.98
424396--424460	15	4.1	16	83	16	82	43	0	0	56	0.99
426166--426253	46	1.9	45	81	6	106	45	3	5	45	1.44
431158--431209	13	4.2	13	78	14	56	80	1	17	0	0.80
431170--431212	12	3.8	12	84	9	63	86	2	11	0	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11