genome.fa.s8982.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008982.1 Hibiscus syriacus cultivar Beakdansim tig00112344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2253222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1401 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173301--173341	20	2.0	20	95	0	73	31	17	12	39	1.86
173321--173491	57	3.0	57	91	0	279	30	15	18	35	1.92
173416--173560	77	1.9	77	94	0	254	28	14	21	35	1.93
173244--173614	191	1.9	191	87	2	548	28	15	20	35	1.93
173493--173614	57	2.1	57	95	0	217	26	16	22	34	1.95
173167--173640	134	3.5	134	78	6	505	28	14	20	36	1.92
173714--173793	20	4.0	20	91	0	124	23	18	17	40	1.91
173714--173817	40	2.6	41	81	1	129	25	17	18	39	1.92
176814--176854	20	2.0	20	95	0	73	26	17	17	39	1.91
176771--176931	77	2.1	77	89	0	241	29	13	18	39	1.88
176891--176953	20	3.2	20	83	0	90	28	12	15	42	1.84
176814--177134	97	3.2	97	82	10	421	29	14	18	37	1.91
177094--177134	20	2.0	20	95	0	73	26	17	17	39	1.91
177021--177268	77	3.2	77	93	1	417	28	14	19	37	1.91
177171--177211	20	2.0	20	85	0	55	26	17	17	39	1.91
177191--177382	57	3.4	57	92	1	305	31	15	17	35	1.91
177362--177402	20	2.0	20	95	0	73	26	17	17	39	1.91
177037--177727	268	2.6	268	93	1	1163	29	14	19	36	1.92
177305--177536	77	3.0	77	91	1	358	29	13	18	37	1.90
177037--177742	134	5.3	133	77	8	734	29	14	19	36	1.91
177464--177629	57	2.9	57	93	0	278	30	14	19	34	1.92
177554--177698	77	1.9	77	95	0	263	28	14	20	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177609--177657	20	2.5	20	79	0	62	30	14	24	30	1.94
177631--177749	57	2.1	57	96	0	220	26	16	21	35	1.95
177382--177760	191	2.0	191	85	2	512	30	14	19	35	1.92
177859--177949	20	4.5	20	84	2	101	24	15	21	38	1.92
177915--177954	21	1.9	21	89	0	62	25	15	27	32	1.95
181897--181964	13	5.2	13	83	0	73	36	16	17	29	1.92
185089--185113	13	1.9	13	100	0	50	60	0	16	24	1.36
185359--185386	12	2.3	12	100	0	56	32	21	14	32	1.93
186235--186594	112	3.2	112	89	1	542	34	11	10	43	1.76
186999--187364	111	3.3	111	87	2	504	33	10	11	44	1.75
187849--188012	87	1.9	87	89	5	260	33	10	10	45	1.74
187767--187979	110	1.9	110	91	0	345	33	10	10	45	1.73
191596--191642	18	2.6	18	96	0	85	25	12	27	34	1.92
195085--195217	57	2.3	60	83	5	157	32	12	15	39	1.84
196158--196199	2	21.0	2	100	0	84	50	0	0	50	1.00
202350--202385	18	2.0	19	89	10	58	44	5	0	50	1.25
202800--202863	18	3.6	18	73	23	62	6	14	29	50	1.67
209529--209687	42	3.9	42	69	14	141	40	5	3	50	1.42
215777--215816	21	2.0	20	85	14	55	45	12	0	42	1.42
216197--216264	31	2.2	30	84	7	93	51	4	4	39	1.42
218693--218730	19	2.0	19	90	10	60	31	26	2	39	1.70
222791--222859	23	3.0	23	84	0	102	30	26	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222946--222995	19	2.5	20	90	6	84	38	18	18	26	1.93
228494--228549	26	2.2	26	83	6	69	17	17	16	48	1.82
229408--229452	13	3.4	13	80	17	56	44	8	0	46	1.34
233784--233821	2	19.0	2	100	0	76	50	0	0	50	1.00
252675--252701	1	27.0	1	100	0	54	0	0	0	100	0.00
253081--253139	26	2.3	26	94	2	102	10	35	16	37	1.83
256649--256678	13	2.4	13	94	5	53	40	0	16	43	1.48
257273--257301	7	4.1	7	100	0	58	13	0	27	58	1.36
258045--258088	22	2.0	22	86	4	61	50	11	20	18	1.77
258356--258404	22	2.2	22	82	7	64	40	0	0	59	0.98
258348--258433	8	11.1	8	71	14	56	38	3	0	58	1.15
258362--258423	15	4.1	15	76	14	56	41	1	0	56	1.09
262508--262537	3	10.0	3	100	0	60	33	0	0	66	0.92
266494--266550	30	1.9	30	100	0	114	36	3	14	45	1.61
269288--269369	30	2.7	30	94	0	137	15	6	60	17	1.54
269294--269369	15	5.1	15	75	0	71	17	6	59	17	1.58
269306--269429	45	2.8	45	78	0	122	16	6	61	15	1.54
269405--269479	30	2.4	32	76	14	77	25	5	56	13	1.58
269342--269454	60	1.9	60	81	7	140	18	7	61	13	1.54
270537--270654	60	2.0	60	80	6	132	38	14	13	33	1.85
275938--276167	115	2.0	115	100	0	460	28	12	23	35	1.91
292605--292650	23	2.0	23	95	0	83	19	4	4	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295993--296025	2	16.5	2	93	0	57	48	3	0	48	1.17
297827--297932	50	2.1	50	89	0	158	22	16	23	37	1.93
298420--298469	21	2.5	21	81	9	61	34	0	6	60	1.21
300605--300681	24	3.0	26	90	7	106	40	0	1	58	1.06
300605--300670	3	22.0	3	80	11	73	37	0	1	60	1.06
301464--301492	13	2.2	13	100	0	58	0	31	62	6	1.22
303021--303082	10	6.3	10	75	20	51	25	0	0	74	0.82
303023--303082	16	3.5	16	77	22	68	25	0	0	75	0.81
303029--303082	12	4.4	13	75	20	62	25	0	0	74	0.83
303021--303082	20	3.2	20	76	19	67	25	0	0	74	0.82
303025--303082	23	2.6	23	86	10	84	25	0	0	74	0.82
303026--303082	26	2.3	26	85	8	75	26	0	0	73	0.83
307361--307386	2	13.0	2	100	0	52	50	0	0	50	1.00
312425--312479	22	2.5	22	93	0	101	34	10	14	40	1.81
313189--313255	29	2.3	29	94	0	116	19	17	20	41	1.90
313218--314130	76	12.0	76	96	0	1639	21	20	21	35	1.96
314255--314314	21	2.7	22	92	7	95	38	0	1	60	1.07
314262--314328	27	2.3	28	82	15	82	41	0	1	56	1.08
314255--314328	21	3.0	25	86	13	93	40	0	1	58	1.07
314281--314328	14	3.5	14	81	13	64	43	0	2	54	1.12
314255--314317	3	21.0	3	79	12	67	38	0	1	60	1.07
315113--315141	13	2.2	13	100	0	58	0	31	62	6	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319180--319218	19	2.1	19	85	9	53	64	2	2	30	1.21
325611--325641	15	2.1	15	93	0	53	12	25	25	35	1.92
325983--326022	20	2.0	20	100	0	80	40	5	25	30	1.77
328230--328276	7	6.7	7	100	0	94	57	0	0	42	0.98
334940--334995	22	2.5	23	85	5	62	32	25	16	26	1.96
334951--334995	22	2.0	22	91	0	72	31	26	17	24	1.97
338014--338089	31	2.5	30	74	12	75	46	3	23	26	1.70
343259--343319	32	1.9	32	93	6	106	21	0	13	65	1.26
345679--345703	12	2.1	12	100	0	50	56	8	16	20	1.65
346564--346610	16	3.1	15	85	8	60	68	6	0	25	1.13
346766--346862	51	1.9	51	86	0	140	28	19	20	30	1.97
349854--349896	15	2.8	15	86	10	52	65	0	2	32	1.06
349851--349900	16	3.1	16	83	16	59	66	0	2	32	1.03
351392--351649	140	1.8	142	88	5	398	26	18	8	46	1.77
352036--352069	2	17.0	2	100	0	68	50	0	0	50	1.00
359764--359966	81	2.5	81	92	4	340	37	6	11	44	1.67
362835--362863	11	2.6	11	100	0	58	48	10	0	41	1.37
373066--373092	12	2.2	12	100	0	54	0	40	0	59	0.98
378839--378887	24	2.0	24	84	7	64	38	2	6	53	1.38
379889--380007	42	2.8	42	93	0	202	17	17	17	47	1.84
380179--380229	21	2.3	23	86	10	70	50	0	0	49	1.00
380196--380295	22	4.2	23	72	20	73	51	1	0	48	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380207--380309	33	3.2	30	74	17	84	48	0	0	49	1.14
380289--380383	29	3.2	28	78	19	88	45	0	2	52	1.12
380399--380568	90	1.9	86	81	9	200	50	4	0	45	1.23
380894--381009	21	5.6	21	75	9	114	24	18	25	31	1.98
381838--381989	21	7.4	21	72	15	131	38	21	19	21	1.94
381831--382010	40	4.4	41	91	4	276	35	22	20	22	1.96
381899--382029	61	2.1	61	80	8	140	34	25	19	19	1.96
381831--382009	82	2.2	82	90	4	281	35	22	19	22	1.96
381859--382035	21	8.6	21	77	10	154	35	24	19	20	1.96
382232--382303	30	2.4	30	95	2	128	33	19	5	41	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12