genome.fa.s8982.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008982.1 Hibiscus syriacus cultivar Beakdansim tig00112344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2253222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1401 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539101--539156	27	2.1	26	83	9	69	60	5	10	23	1.50
541568--541604	2	19.0	2	94	5	67	48	0	0	51	1.00
541651--541679	14	2.0	15	93	6	51	62	27	3	6	1.37
543599--543694	44	2.2	42	83	7	122	27	19	22	30	1.98
543772--543802	15	2.1	15	100	0	62	51	6	6	35	1.53
547523--547562	21	1.9	21	85	10	55	35	7	2	55	1.42
549232--549272	14	2.9	14	92	0	64	7	24	9	58	1.55
549531--549673	64	2.2	65	85	8	186	27	16	24	31	1.97
551280--551385	44	2.4	45	80	7	126	28	20	20	30	1.98
555753--555832	21	3.9	20	79	9	90	33	26	20	20	1.96
556685--556741	21	2.9	18	79	10	60	22	21	21	35	1.96
557777--557843	22	3.0	22	95	2	116	25	28	26	19	1.99
559530--559574	21	2.1	21	87	0	63	15	24	28	31	1.96
563089--563125	18	2.1	18	94	0	65	5	37	16	40	1.71
563645--563674	2	15.5	2	93	6	53	46	0	0	53	1.00
564131--564340	65	3.2	64	77	9	212	30	23	18	27	1.98
564862--564939	21	3.7	21	89	3	113	37	21	16	24	1.94
574985--575062	30	2.5	31	82	10	90	60	5	14	20	1.53
574978--575066	32	2.9	31	78	13	103	55	4	16	23	1.60
574985--575095	31	3.6	31	80	12	106	56	6	14	22	1.60
580938--581218	141	2.0	144	86	6	403	51	15	10	22	1.73
586369--586597	111	2.1	111	81	2	271	20	32	11	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587947--587989	21	2.0	21	82	8	52	51	0	0	48	1.00
587970--588003	17	2.1	17	88	5	52	50	0	0	50	1.00
588292--588365	37	2.0	36	82	7	87	51	4	1	43	1.29
588698--588781	44	1.9	44	85	0	114	34	13	15	36	1.86
589271--589358	32	2.7	33	91	3	133	39	36	10	13	1.79
595255--595341	31	2.8	30	82	8	86	29	8	5	56	1.52
602538--602595	26	2.4	24	86	11	82	39	1	0	58	1.08
602540--602591	14	3.9	14	76	19	56	38	1	0	59	1.08
602548--602594	21	2.2	22	85	11	62	40	2	0	57	1.11
602554--602606	25	2.1	26	82	10	65	41	1	0	56	1.10
603859--603884	2	13.0	2	100	0	52	50	0	0	50	1.00
604295--604327	2	16.5	2	100	0	66	51	0	0	48	1.00
605966--606069	41	2.7	37	77	13	111	46	1	0	50	1.18
605976--606048	21	3.5	20	73	15	69	46	2	0	50	1.15
605980--606058	41	1.9	42	89	2	124	45	2	1	50	1.23
614797--614899	31	3.4	31	83	4	93	33	23	17	25	1.96
614827--614921	31	3.1	31	77	8	104	34	20	17	27	1.95
615572--615720	64	2.3	65	85	6	196	28	17	20	33	1.95
619010--619104	31	3.1	31	80	3	111	34	21	17	26	1.95
619234--619269	14	2.4	16	82	17	51	38	13	5	41	1.68
620727--621036	154	2.0	153	93	1	532	25	10	26	38	1.88
621843--621869	13	2.1	13	100	0	54	48	29	7	14	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630669--630837	81	2.1	80	87	3	248	33	20	22	23	1.97
633939--633991	23	2.3	23	86	0	70	52	11	20	15	1.72
634827--634874	16	3.0	16	96	0	87	47	0	2	50	1.12
634796--634870	16	4.1	18	71	22	66	49	1	1	48	1.18
635189--635232	19	2.3	19	88	7	63	50	0	0	50	1.00
635475--635529	24	2.3	23	78	9	65	45	7	7	40	1.60
636009--636395	183	2.1	183	91	3	629	45	7	3	43	1.47
636651--636756	30	3.5	30	98	1	203	45	26	12	16	1.82
639835--639958	60	2.0	62	85	4	171	36	4	14	44	1.67
642874--642900	13	2.1	13	100	0	54	55	14	0	29	1.40
643787--643820	17	2.0	17	100	0	68	64	0	5	29	1.17
645940--645972	2	16.5	2	100	0	66	51	0	0	48	1.00
646106--646155	24	2.1	24	85	7	66	38	10	6	46	1.62
646337--646383	25	2.0	23	83	8	58	44	14	14	25	1.84
647836--647989	40	3.8	40	72	9	107	33	12	15	38	1.86
647836--647970	41	3.3	40	75	13	125	32	12	14	40	1.84
647917--648025	40	2.7	41	80	11	116	34	12	15	36	1.86
647836--648009	81	2.1	82	81	7	194	33	13	15	37	1.86
651950--651982	2	16.5	2	100	0	66	48	0	51	0	1.00
655625--655663	2	19.5	2	94	0	69	51	0	0	48	1.00
657296--657344	20	2.3	22	86	10	66	42	0	2	55	1.11
657307--657344	18	2.0	19	85	10	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659179--659257	15	5.4	14	70	11	52	49	0	0	50	1.00
659194--659260	33	2.0	34	88	11	104	49	0	0	50	1.00
667993--668024	16	2.0	16	100	0	64	43	6	6	43	1.54
670860--670925	9	7.3	9	76	19	50	37	0	0	62	0.96
670867--670925	3	18.7	3	82	6	64	38	0	0	61	0.96
671038--671108	28	2.5	28	97	0	133	15	50	21	12	1.77
671391--671433	16	2.9	14	80	16	50	76	2	20	0	0.89
671401--671433	16	2.1	16	94	0	57	78	0	21	0	0.75
676711--676785	30	2.5	29	95	2	114	25	30	13	30	1.94
683725--683797	6	11.3	6	75	18	67	78	0	20	1	0.83
683729--683797	15	4.7	15	80	8	79	78	0	20	1	0.83
683725--683791	24	3.0	23	85	8	93	77	0	20	1	0.85
683726--683797	14	4.9	14	77	15	83	77	0	20	1	0.84
684950--685411	83	5.5	83	93	2	809	28	13	20	36	1.91
686140--686682	113	4.8	113	81	4	593	38	13	18	29	1.89
686626--686722	38	2.5	40	93	3	162	48	9	21	20	1.77
686137--686711	226	2.5	226	87	3	667	38	13	18	29	1.89
686515--686841	151	2.2	149	95	5	577	39	13	19	27	1.89
686556--686795	73	3.2	73	63	16	193	37	13	18	30	1.89
687094--687164	3	22.7	3	85	5	88	38	0	0	61	0.96
687264--687295	16	2.0	16	100	0	64	6	56	18	18	1.62
687277--687350	28	2.6	28	93	0	130	13	50	21	14	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689336--689399	2	32.5	2	96	3	121	50	0	0	50	1.00
691682--691740	31	1.9	31	92	0	100	40	6	10	42	1.65
691765--691807	22	2.0	22	100	0	86	51	13	0	34	1.42
691767--691815	22	2.2	22	88	3	71	55	14	0	30	1.40
691755--692170	54	7.6	54	84	8	563	52	12	0	34	1.42
691787--692333	32	18.5	32	67	24	284	52	13	0	34	1.42
691868--691920	14	3.5	14	72	18	52	56	3	0	39	1.17
691911--691984	26	3.2	23	70	19	64	54	16	0	29	1.43
691990--692038	22	2.2	22	85	3	62	55	12	0	32	1.37
692042--692084	22	2.0	22	100	0	86	51	13	0	34	1.42
692044--692092	22	2.2	22	88	3	71	55	14	0	30	1.40
692096--692138	22	2.0	22	100	0	86	51	13	0	34	1.42
692098--692146	22	2.2	22	88	3	71	55	14	0	30	1.40
691770--692304	134	3.9	134	78	10	495	52	13	0	34	1.43
692181--692304	54	2.3	54	95	0	221	51	13	0	34	1.42
692230--692272	22	2.0	22	95	0	77	48	13	0	37	1.43
692232--692280	22	2.2	22	85	3	62	53	14	0	32	1.41
692249--692365	32	3.5	33	85	7	146	51	8	0	40	1.33
692336--692394	15	3.7	15	78	10	64	45	1	0	52	1.10
704744--705042	44	7.0	43	85	7	387	18	26	24	31	1.97
704744--705064	123	2.5	124	84	6	342	17	24	24	32	1.97
707352--707604	44	5.8	43	90	2	371	18	26	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707352--707604	87	2.9	86	87	2	362	18	26	23	31	1.98
709636--709681	21	2.3	21	85	10	62	45	0	2	52	1.13
711625--711676	23	2.3	23	90	3	79	30	26	25	17	1.97
711633--711678	23	2.0	23	95	4	85	26	28	26	19	1.99
711892--711950	30	2.0	30	93	0	100	33	23	3	38	1.72
712317--712467	67	2.3	67	88	2	214	17	27	27	27	1.98
712317--712489	67	2.6	66	84	8	206	17	27	27	27	1.98
718519--718585	21	3.0	22	95	4	118	26	26	26	19	1.99
718799--718857	30	2.0	30	93	0	100	33	23	3	38	1.72
719224--719375	67	2.3	67	86	7	202	17	26	28	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12