genome.fa.s8982.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008982.1 Hibiscus syriacus cultivar Beakdansim tig00112344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2253222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  6  of  12  ( 1401 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920464--920531	19	3.8	19	87	12	101	13	22	17	47	1.82
920668--920704	14	2.6	14	86	0	56	48	21	0	29	1.50
922572--922625	20	2.7	20	88	0	81	40	22	20	16	1.91
922612--922690	32	2.4	33	91	2	124	48	21	17	12	1.80
922702--922757	14	3.7	14	78	17	67	10	16	23	50	1.76
922697--922773	32	2.4	33	97	2	147	12	19	22	45	1.84
922758--922801	20	2.2	20	88	4	63	18	22	20	38	1.93
923294--923338	18	2.5	18	92	0	72	15	15	42	26	1.87
924658--924716	20	3.0	20	87	0	73	42	22	18	16	1.89
924979--925022	22	2.0	22	95	0	79	18	15	45	20	1.85
925190--925305	20	5.7	21	77	10	82	23	17	22	37	1.94
925190--925284	41	2.3	41	85	0	136	23	16	23	36	1.94
925251--925304	20	2.7	20	94	0	90	25	18	22	33	1.97
925190--925307	61	1.9	62	87	5	177	22	16	22	38	1.93
925190--925325	61	2.2	61	83	6	159	22	19	22	36	1.95
925372--925428	21	2.7	21	100	0	114	29	29	15	24	1.96
937628--937771	53	2.7	53	79	2	164	43	5	25	26	1.76
937619--937790	53	3.2	53	76	1	157	47	4	23	24	1.71
938492--938553	22	2.8	22	92	0	97	43	8	4	43	1.55
938669--938708	2	20.0	2	100	0	80	50	50	0	0	1.00
938694--938783	45	2.0	45	91	0	144	44	22	4	28	1.72
938759--938785	13	2.1	13	100	0	54	40	7	7	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938786--938846	31	2.0	31	87	6	88	42	9	6	40	1.64
938842--938894	13	3.9	13	85	5	70	33	7	9	49	1.64
938880--938976	22	4.4	22	82	7	108	46	4	5	44	1.44
938971--939253	2	142.0	2	69	21	132	45	4	2	47	1.38
938882--939056	44	4.2	44	73	18	156	48	2	3	45	1.34
939041--939138	51	1.9	51	85	4	135	42	8	4	44	1.53
939134--939196	33	1.9	32	84	9	83	46	4	4	44	1.45
939175--939229	15	3.6	14	75	20	56	41	1	1	54	1.21
939175--939252	25	3.5	22	81	15	88	43	2	1	52	1.23
939184--939253	27	2.6	27	93	4	115	45	2	0	51	1.16
942018--942061	13	3.3	13	83	3	52	79	0	2	18	0.83
942559--942603	18	2.5	18	100	0	90	37	4	0	57	1.19
946871--946998	51	2.5	51	88	2	177	19	34	28	17	1.94
947067--948358	435	3.0	434	95	0	2327	23	11	9	55	1.65
948618--948732	51	2.3	51	83	3	142	17	29	35	17	1.93
959487--959570	31	2.7	31	94	0	141	30	10	10	47	1.72
960244--960275	15	2.0	17	88	11	50	34	0	9	56	1.32
968126--968344	44	5.0	44	76	7	191	52	7	14	25	1.67
968286--968381	46	2.2	45	84	5	124	57	4	10	28	1.51
968148--968344	87	2.3	88	78	7	215	51	8	14	25	1.69
968356--968419	28	2.2	30	81	13	80	56	9	10	23	1.63
971477--971507	16	1.9	16	100	0	62	38	3	12	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970964--971956	266	3.7	264	87	2	1391	29	16	19	34	1.94
971742--971773	16	2.0	16	100	0	64	37	0	12	50	1.41
972194--974041	265	7.0	265	83	3	2218	28	16	19	35	1.93
972708--972738	16	1.9	16	93	0	53	38	6	12	41	1.69
971957--974041	530	4.0	530	85	4	2587	28	16	19	35	1.94
972973--973003	16	1.9	16	100	0	62	38	3	12	45	1.59
973238--973268	16	1.9	16	100	0	62	38	3	12	45	1.59
971957--974041	795	2.7	791	84	4	2592	28	16	19	35	1.94
974028--974067	19	2.1	19	100	0	80	35	10	10	45	1.71
974549--974589	14	3.2	13	86	10	57	43	21	12	21	1.85
975353--975440	23	3.8	23	71	14	72	30	23	23	21	1.99
977939--977999	32	1.9	32	93	0	104	29	21	22	26	1.99
980407--980437	16	1.9	16	100	0	62	38	3	12	45	1.59
980672--980702	16	1.9	16	100	0	62	38	3	12	45	1.59
980341--1032964	264	197.4	265	70	12	16371	28	16	18	35	1.93
980934--980966	16	2.1	16	100	0	66	36	6	12	45	1.66
981202--981232	16	1.9	16	100	0	62	38	3	12	45	1.59
981731--981763	16	2.1	16	94	0	57	36	6	15	42	1.71
982246--982275	15	2.0	15	93	0	51	43	0	13	43	1.43
982511--982554	16	2.9	16	90	10	74	43	4	6	45	1.51
983053--983083	16	1.9	16	100	0	62	38	3	12	45	1.59
983316--983346	16	1.9	16	100	0	62	38	3	12	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984107--984137	16	1.9	16	100	0	62	38	3	12	45	1.59
984373--984403	16	1.9	16	100	0	62	38	3	12	45	1.59
984886--984917	16	2.0	16	100	0	64	37	0	12	50	1.41
985420--985451	16	2.0	16	100	0	64	37	0	12	50	1.41
980341--1032964	529	99.2	529	75	10	31900	28	16	18	35	1.93
985949--985980	16	2.0	16	100	0	64	37	0	12	50	1.41
986976--987005	16	1.9	15	93	6	51	36	3	13	46	1.60
987752--987782	16	1.9	16	100	0	62	38	3	12	45	1.59
988530--988561	16	2.0	16	100	0	64	37	0	12	50	1.41
988794--988824	16	1.9	16	93	0	53	35	3	12	48	1.58
989587--989618	16	2.0	16	100	0	64	37	0	12	50	1.41
989851--989881	16	1.9	16	100	0	62	38	3	12	45	1.59
990115--990146	16	2.0	16	100	0	64	37	0	12	50	1.41
990379--990409	16	1.9	16	100	0	62	38	3	12	45	1.59
991686--991717	16	2.0	16	100	0	64	37	0	12	50	1.41
991950--991980	16	1.9	16	100	0	62	38	3	12	45	1.59
992214--992245	16	2.0	16	100	0	64	37	0	12	50	1.41
993327--993358	16	2.0	16	100	0	64	37	0	12	50	1.41
993343--994736	249	5.4	247	79	7	1347	28	16	19	35	1.93
994620--994651	16	2.0	16	100	0	64	37	0	12	50	1.41
994838--994868	16	1.9	16	100	0	62	38	3	12	45	1.59
994508--994954	218	2.0	219	87	2	639	28	16	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995630--995661	16	2.0	16	100	0	64	37	0	12	50	1.41
995894--995925	16	2.0	16	100	0	64	37	0	12	50	1.41
996158--996188	16	1.9	16	100	0	62	38	3	12	45	1.59
996422--996453	16	2.0	16	100	0	64	37	0	12	50	1.41
994727--1032964	265	143.6	265	72	11	17101	28	16	18	35	1.93
996947--996978	16	2.0	16	100	0	64	37	0	12	50	1.41
997476--997507	16	2.0	16	100	0	64	37	0	12	50	1.41
997742--997772	16	1.9	16	100	0	62	38	3	12	45	1.59
998272--998303	16	2.0	16	100	0	64	37	0	12	50	1.41
998537--998567	16	1.9	16	100	0	62	38	3	12	45	1.59
999067--999097	16	1.9	16	100	0	62	38	3	12	45	1.59
999332--999362	16	1.9	16	100	0	62	38	3	12	45	1.59
999847--999877	16	1.9	16	100	0	62	38	3	12	45	1.59
1000363--1000393	16	1.9	16	100	0	62	38	3	12	45	1.59
1001131--1001166	16	2.2	16	90	0	54	38	2	16	41	1.63
1002179--1002209	16	1.9	16	100	0	62	38	3	12	45	1.59
1002709--1002739	16	1.9	16	100	0	62	38	3	12	45	1.59
1002974--1003004	16	1.9	16	100	0	62	38	3	12	45	1.59
1003501--1003531	16	1.9	16	100	0	62	38	3	12	45	1.59
1003782--1003857	28	2.6	29	89	8	118	32	7	11	47	1.69
1003866--1003911	23	1.9	24	91	8	76	54	2	6	36	1.39
1004887--1004971	2	43.0	2	97	2	163	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006066--1006096	16	1.9	16	93	0	53	41	3	9	45	1.53
1006861--1006891	16	1.9	16	100	0	62	38	3	12	45	1.59
1007385--1007415	16	1.9	16	100	0	62	38	3	12	45	1.59
1008162--1008197	16	2.2	16	90	0	54	33	2	19	44	1.65
1009221--1009251	16	1.9	16	100	0	62	38	3	12	45	1.59
1009486--1009516	16	1.9	16	100	0	62	38	3	12	45	1.59
1009751--1009781	16	1.9	16	100	0	62	38	3	12	45	1.59
1010792--1010822	16	1.9	16	93	0	53	38	3	16	41	1.64
1012086--1012121	16	2.2	16	90	0	54	33	2	19	44	1.65
1012620--1012650	16	1.9	16	100	0	62	38	3	12	45	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12