genome.fa.s8985.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008985.1 Hibiscus syriacus cultivar Beakdansim tig00112349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1528252

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 976 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303733--303778	3	15.0	3	95	4	83	32	0	0	67	0.91
305739--305806	3	22.0	3	82	5	82	38	0	1	60	1.06
306214--306249	11	3.3	11	84	0	54	83	0	16	0	0.65
307153--307217	3	21.7	3	80	12	71	26	0	1	72	0.94
307225--307267	20	2.2	19	91	8	68	60	0	0	39	0.97
307491--307546	26	2.2	25	83	6	67	42	1	0	55	1.10
307517--307558	17	2.5	17	88	7	59	40	0	0	59	0.97
307503--307553	26	2.0	26	84	7	68	43	0	0	56	0.99
312147--312198	7	7.4	7	81	14	54	84	3	11	0	0.74
314040--314299	92	2.8	92	93	0	448	27	15	22	34	1.94
316681--316757	22	3.5	22	92	0	136	35	11	14	38	1.82
317436--318528	76	14.4	76	96	0	1992	21	20	22	35	1.96
318660--318724	3	21.0	3	84	6	85	38	0	0	61	0.96
318665--318731	12	5.3	12	82	7	71	41	0	0	58	0.98
318660--318731	24	2.9	24	89	6	108	40	0	0	59	0.97
319125--319166	21	2.0	21	86	4	59	80	2	16	0	0.81
320063--320120	3	20.7	3	81	16	63	25	0	1	72	0.94
320131--320169	20	1.9	21	94	5	71	58	0	0	41	0.98
320425--320466	17	2.5	17	88	7	59	40	0	0	59	0.97
320411--320461	26	2.0	26	84	7	68	43	0	0	56	0.99
321586--321627	19	2.2	19	86	0	57	30	28	16	23	1.96
321731--321789	20	3.0	20	89	0	91	37	22	18	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321726--321816	40	2.3	41	77	11	98	39	20	15	24	1.91
321964--322010	22	2.1	22	88	0	67	14	42	21	21	1.88
322382--322420	20	2.0	20	84	0	51	25	12	15	46	1.81
324506--324560	21	2.6	21	94	0	92	21	40	18	20	1.92
325909--325940	13	2.4	13	94	5	55	18	3	15	62	1.45
325960--326039	16	4.6	16	68	17	61	20	3	15	61	1.49
325949--326059	54	2.1	54	96	0	204	22	4	14	58	1.54
326121--326184	20	3.2	20	78	8	67	18	18	15	46	1.84
329480--329517	16	2.5	15	84	12	51	65	0	5	28	1.14
329657--329816	40	4.0	40	72	10	137	35	12	23	29	1.91
329655--329746	20	4.6	20	81	8	89	35	11	25	27	1.91
329697--329753	20	2.9	19	82	12	71	40	10	24	24	1.87
329697--329764	20	3.4	20	82	11	70	36	11	25	26	1.90
329653--329805	80	1.9	81	81	9	188	33	12	23	30	1.92
329777--329866	21	4.3	21	87	2	112	28	13	26	31	1.94
329770--329866	41	2.3	42	78	5	108	31	13	24	29	1.93
331902--331942	2	20.5	2	100	0	82	48	0	0	51	1.00
332394--332429	2	18.0	2	100	0	72	50	0	0	50	1.00
333634--333662	13	2.2	13	100	0	58	55	0	0	44	0.99
346001--346046	24	1.9	24	90	0	74	10	26	19	43	1.84
346351--346452	34	2.8	37	89	10	167	43	14	14	27	1.85
346351--346486	37	3.8	35	84	9	168	41	13	14	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346842--346884	18	2.5	17	85	7	61	25	4	2	67	1.22
347132--347193	30	2.1	29	82	11	72	22	3	1	72	1.08
350498--350588	16	5.9	14	73	19	65	79	6	13	1	0.98
350492--350565	32	2.3	34	80	17	86	79	6	13	0	0.91
350492--350574	16	5.1	16	74	17	73	78	7	14	0	0.95
350498--350568	8	9.0	8	75	9	74	80	5	14	0	0.89
350499--350589	22	3.9	23	73	17	71	78	6	14	1	1.01
351226--351296	22	3.2	22	95	0	124	33	23	14	28	1.94
352227--352508	36	8.0	36	79	8	303	25	19	14	40	1.89
352185--352508	72	4.6	73	75	10	230	26	19	15	38	1.91
352283--352471	102	1.9	102	88	2	290	26	19	13	40	1.89
352247--352571	138	2.4	137	83	2	427	27	20	12	39	1.88
352483--352639	68	2.4	68	84	5	205	31	22	8	36	1.85
353278--354319	105	10.0	105	93	1	1648	34	26	17	22	1.96
354866--354965	34	2.8	36	91	8	161	43	15	14	28	1.85
354866--355001	37	3.8	35	84	9	159	41	13	13	30	1.84
355356--355398	18	2.5	17	85	7	61	25	4	2	67	1.22
355647--355701	15	3.5	15	78	11	56	23	1	1	72	1.04
355964--355993	14	2.1	14	93	0	51	23	0	0	76	0.78
357845--357942	43	2.3	43	90	0	160	39	7	20	32	1.80
358885--358982	50	2.0	50	91	0	160	23	24	8	43	1.80
361959--362001	3	14.0	3	85	4	59	2	30	2	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361975--362073	50	2.0	50	85	0	135	22	24	8	45	1.79
363323--363388	33	2.0	33	96	0	123	34	19	3	42	1.67
365327--365380	20	2.8	20	97	2	101	33	18	14	33	1.92
367216--367262	20	2.3	20	100	0	94	25	27	27	19	1.99
374721--374777	20	2.8	20	94	0	96	31	22	14	31	1.93
379652--379763	21	5.3	21	92	0	161	25	33	28	12	1.92
380079--380109	15	2.1	15	93	0	53	54	6	0	38	1.26
382291--382353	23	2.6	24	78	19	60	50	1	0	47	1.10
382325--382371	22	2.1	23	88	4	69	44	2	0	53	1.12
382473--382559	27	3.2	28	73	19	69	51	2	0	45	1.13
382551--382595	23	2.0	23	90	0	72	53	2	0	44	1.13
382947--383005	14	4.1	15	78	8	68	32	18	6	42	1.77
382947--383005	29	2.0	29	90	0	91	32	18	6	42	1.77
385684--385708	12	2.1	12	100	0	50	0	16	0	84	0.63
390370--390840	201	2.3	201	81	2	518	34	21	17	26	1.95
392017--392052	18	2.1	16	90	10	54	5	13	2	77	1.05
392947--392981	16	2.2	16	94	0	61	25	0	8	65	1.21
397745--397770	13	2.0	13	100	0	52	23	15	30	30	1.95
405292--405342	2	25.5	2	100	0	102	50	0	0	49	1.00
407017--407048	14	2.3	14	94	0	55	9	12	28	50	1.71
408036--408090	16	3.4	16	89	0	74	10	12	20	56	1.66
408396--408444	2	24.5	2	100	0	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415119--415174	21	2.9	19	80	14	62	50	1	1	46	1.22
416872--416922	3	16.7	3	84	11	68	31	0	1	66	1.03
417409--417735	30	11.2	30	70	9	165	19	12	10	58	1.62
417409--417743	60	5.7	61	71	10	243	20	11	10	57	1.62
417522--417561	20	2.0	20	90	0	62	15	17	10	57	1.64
417532--417741	115	1.8	114	84	1	285	20	11	9	59	1.59
419425--419474	24	2.1	24	85	7	66	24	2	14	60	1.45
420413--420441	12	2.4	12	100	0	58	17	6	13	62	1.52
426710--426759	24	2.1	24	85	7	66	24	2	14	60	1.45
430203--430257	21	2.7	20	81	10	67	23	14	38	23	1.92
435317--435377	20	2.9	21	87	7	79	18	24	34	22	1.96
441788--441832	21	2.1	21	83	0	54	51	4	11	33	1.58
443727--444141	207	2.0	207	91	0	670	25	19	18	36	1.94
444534--444577	14	3.0	14	87	12	70	15	22	13	47	1.81
444534--444577	16	2.9	16	93	6	74	15	22	13	47	1.81
445449--445615	93	1.8	93	87	6	252	16	16	8	59	1.60
464855--465079	105	2.1	105	83	0	279	38	22	16	22	1.93
465861--465903	21	2.0	21	90	0	68	16	23	27	32	1.96
474923--474962	21	1.9	21	94	0	71	12	25	37	25	1.91
489029--489085	28	2.0	28	90	6	89	50	0	0	49	1.00
489039--489092	20	2.6	20	75	16	56	42	0	0	57	0.98
489009--489111	48	2.1	48	82	8	120	49	0	0	49	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489181--489254	22	3.2	23	79	9	80	48	0	1	50	1.09
489220--489287	19	3.6	18	70	18	50	48	1	1	48	1.19
489300--489337	18	2.1	18	90	0	58	55	0	5	39	1.23
489399--489445	22	2.1	23	88	4	69	53	0	2	44	1.12
489407--489467	22	2.8	22	80	7	63	52	0	1	45	1.10
489328--489453	54	2.3	53	77	15	132	48	0	1	49	1.16
491586--491620	18	1.9	18	94	0	61	17	11	40	31	1.85
496581--496638	29	2.0	29	93	0	98	17	5	13	63	1.47
497804--497841	20	1.9	20	94	0	67	13	2	10	73	1.19
500186--500492	151	2.0	151	95	1	555	28	15	19	36	1.93

Tables:   1   2   3   4   5   6   7   8   9