genome.fa.s8985.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008985.1 Hibiscus syriacus cultivar Beakdansim tig00112349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1528252

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 976 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960186--960241	19	2.9	19	87	10	78	33	28	21	16	1.95
962887--962935	24	2.0	24	100	0	98	16	14	12	57	1.66
964807--964861	27	2.0	27	96	0	101	29	12	20	38	1.89
965269--965352	39	2.1	39	93	6	143	28	17	11	41	1.85
969509--969554	13	3.6	13	88	5	67	17	47	17	17	1.83
969582--969655	31	2.4	31	83	2	103	52	0	0	47	1.00
969653--969707	12	4.6	12	81	0	74	25	45	14	14	1.83
974470--974506	14	2.5	15	91	8	67	5	8	10	75	1.17
974474--974507	14	2.4	14	100	0	68	5	5	14	73	1.21
979680--979709	2	15.0	2	100	0	60	50	0	0	50	1.00
980108--980211	39	2.7	39	81	3	120	32	17	25	24	1.96
980067--980211	78	1.9	78	82	0	182	30	18	27	23	1.98
980164--980268	39	2.7	39	80	0	120	32	23	31	12	1.92
985893--985931	19	2.1	19	100	0	78	53	10	10	25	1.66
986633--986684	16	3.2	17	78	13	65	36	3	0	59	1.16
987042--987074	17	1.9	17	93	0	57	72	3	0	24	0.98
987517--987562	20	2.3	20	72	24	51	45	0	2	52	1.13
989062--989113	20	2.5	20	82	17	63	32	19	25	23	1.97
989922--990076	64	2.4	64	84	5	197	27	22	18	31	1.97
991506--991548	21	2.0	21	82	8	52	62	6	27	2	1.33
995855--995946	44	2.1	44	85	0	121	31	22	19	26	1.98
997867--997913	22	2.1	22	84	7	60	23	2	25	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998164--998197	12	2.7	13	86	9	52	44	8	5	41	1.60
998518--998673	65	2.4	64	84	3	197	28	22	17	32	1.96
1001186--1001228	22	2.0	23	86	9	63	46	2	0	51	1.13
1005057--1005104	15	3.2	16	77	16	50	62	0	0	37	0.95
1005238--1005605	111	3.4	111	81	6	439	27	13	25	33	1.94
1005606--1005679	37	2.0	37	89	0	112	20	16	20	43	1.88
1005717--1005902	42	4.4	42	95	0	318	32	19	24	23	1.98
1011269--1011306	19	2.1	18	85	14	51	52	0	2	44	1.14
1011332--1011384	2	26.5	2	100	0	106	50	0	0	49	1.00
1015234--1015349	61	1.9	61	85	0	160	24	15	27	32	1.95
1015718--1015818	47	2.1	47	92	5	168	48	7	17	25	1.74
1017681--1017742	19	3.3	19	100	0	124	43	19	16	20	1.88
1020045--1020069	3	8.3	3	100	0	50	32	0	0	68	0.90
1020863--1020918	24	2.3	23	81	6	58	26	1	1	69	1.08
1028798--1029168	128	2.8	129	81	8	410	29	25	16	28	1.97
1029067--1029520	111	4.0	111	82	6	493	29	23	16	29	1.96
1030028--1030196	45	3.7	45	91	2	241	30	18	10	40	1.84
1030045--1030233	90	2.1	90	85	4	247	30	20	10	39	1.85
1030737--1030789	22	2.5	21	87	6	72	30	22	16	30	1.96
1030704--1030883	96	1.9	95	83	3	229	28	20	18	32	1.97
1036869--1037172	45	6.7	45	86	2	405	32	17	8	41	1.80
1036874--1037172	135	2.2	135	89	1	456	32	17	8	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036920--1037209	135	2.1	135	87	2	413	32	18	8	40	1.81
1036920--1037209	90	3.2	88	84	5	316	32	18	8	40	1.81
1037808--1037857	20	2.4	21	83	9	59	34	14	16	36	1.88
1038389--1038417	13	2.1	14	93	6	51	34	13	0	51	1.42
1044407--1044431	12	2.1	12	100	0	50	44	24	16	16	1.86
1044461--1044504	21	2.0	22	95	4	81	22	34	25	18	1.96
1047010--1047188	20	8.9	20	73	12	125	40	21	21	17	1.92
1047094--1047201	40	2.7	40	92	0	180	37	23	22	16	1.93
1047068--1047188	60	2.0	61	90	6	192	37	23	22	17	1.94
1047072--1047201	20	6.4	20	78	8	138	36	24	21	16	1.94
1048011--1048282	20	13.4	20	83	8	266	17	20	25	36	1.94
1048071--1048282	62	3.5	62	85	5	238	17	19	26	36	1.94
1048273--1048326	20	2.7	20	94	0	90	11	20	18	50	1.77
1048313--1048363	19	2.6	20	87	9	61	15	17	23	43	1.88
1048906--1048947	13	3.2	13	78	15	50	38	2	0	59	1.10
1049789--1049848	27	2.3	26	88	5	86	58	0	0	41	0.98
1049807--1049924	27	4.3	27	73	3	92	49	3	4	43	1.39
1049922--1049956	19	1.9	18	88	11	54	57	2	0	40	1.14
1057863--1057905	7	5.9	7	86	8	59	37	0	0	62	0.95
1057863--1057905	15	2.9	14	89	6	59	37	0	0	62	0.95
1057865--1057906	8	5.5	8	91	5	61	33	0	0	66	0.92
1063148--1063195	24	2.0	24	100	0	96	33	8	25	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063878--1063932	18	3.1	18	69	15	51	63	1	27	7	1.31
1063878--1063951	36	2.1	36	86	0	103	60	6	25	6	1.47
1066800--1066836	11	3.5	11	79	20	51	59	0	40	0	0.97
1066798--1066836	21	1.9	20	94	5	69	58	0	41	0	0.98
1067129--1067199	35	2.0	35	83	0	88	43	2	8	45	1.49
1067350--1067525	79	2.3	76	76	7	178	37	1	8	52	1.39
1067617--1067662	16	2.9	16	84	9	51	32	0	6	60	1.22
1070109--1070176	24	2.8	24	80	8	93	42	2	2	51	1.32
1070114--1070179	21	3.0	21	75	16	62	42	1	4	51	1.31
1070165--1070211	21	2.2	22	85	11	62	51	6	2	40	1.39
1070589--1070623	12	2.9	12	86	0	52	45	8	17	28	1.77
1071943--1071990	23	2.1	23	88	0	69	35	6	18	39	1.76
1072928--1073085	21	7.8	20	70	7	77	37	25	17	18	1.93
1073053--1073245	20	9.6	20	82	5	228	34	27	19	18	1.95
1073623--1073693	33	2.2	33	92	0	115	11	22	16	49	1.78
1073773--1073849	21	3.7	21	81	6	102	48	16	22	12	1.80
1073834--1073890	14	3.7	14	72	20	51	45	22	24	7	1.77
1073827--1073906	33	2.4	33	93	0	133	48	22	21	7	1.74
1073902--1074029	19	7.1	19	71	19	87	10	25	18	45	1.82
1073924--1073980	14	3.7	14	75	20	60	8	24	22	43	1.81
1073907--1074029	33	3.5	33	88	10	165	10	24	18	46	1.81
1073965--1074029	21	3.1	21	82	4	96	10	26	15	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075713--1075934	92	2.4	93	97	1	428	22	13	18	45	1.85
1076050--1076106	14	3.7	14	72	20	51	43	24	22	8	1.81
1076064--1076155	19	5.4	18	72	24	65	46	28	17	7	1.75
1076032--1076155	33	3.7	33	91	1	185	45	27	17	8	1.78
1076081--1076139	14	3.9	14	76	20	64	47	28	16	6	1.72
1076151--1076323	19	9.6	19	76	12	159	10	20	23	45	1.81
1076173--1076229	14	3.7	14	75	20	51	10	22	22	43	1.84
1076151--1076323	33	4.8	38	80	8	168	10	20	23	45	1.81
1078244--1078279	14	2.6	14	95	0	63	33	0	22	44	1.53
1078385--1078482	19	5.4	19	82	13	134	46	17	21	14	1.83
1078389--1078501	53	2.2	53	96	1	210	46	17	23	13	1.83
1078497--1078700	53	3.9	53	98	0	383	14	24	16	45	1.84
1078492--1078753	72	3.7	73	81	15	275	14	23	17	44	1.85
1078497--1078753	106	2.4	104	89	8	353	14	22	17	45	1.84
1078519--1078753	72	3.3	72	80	10	281	14	22	17	45	1.84
1081035--1081059	12	2.1	12	100	0	50	0	28	0	72	0.86
1081232--1081278	24	2.0	24	87	8	69	38	21	14	25	1.92
1081983--1082198	20	10.8	20	81	4	202	17	18	25	38	1.92
1082504--1082965	112	4.1	112	92	1	757	25	14	14	45	1.83
1083605--1083652	23	2.1	23	88	0	69	35	6	18	39	1.76
1084039--1084859	182	4.5	182	94	0	1426	28	16	12	42	1.85
1084878--1084929	20	2.6	20	70	11	52	17	13	11	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084730--1085301	112	5.1	112	91	0	880	25	14	14	45	1.83
1087176--1087315	66	2.2	61	87	6	190	33	5	24	37	1.77
1087378--1087420	16	2.6	18	78	17	56	67	0	2	30	1.03
1087378--1087419	11	3.8	11	84	9	59	69	0	2	28	1.01
1090430--1090575	65	2.3	64	81	10	156	41	4	6	47	1.49
1090707--1090764	19	3.0	19	77	5	71	46	6	1	44	1.40
1091165--1091289	49	2.5	49	76	15	132	53	12	0	33	1.43
1091194--1091256	28	2.2	30	91	5	103	55	12	1	30	1.47
1091233--1091281	21	2.3	21	85	3	71	53	16	2	28	1.54
1091229--1091284	21	2.6	21	75	16	60	55	14	1	28	1.49

Tables:   1   2   3   4   5   6   7   8   9