genome.fa.s8985.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008985.1 Hibiscus syriacus cultivar Beakdansim tig00112349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1528252

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 976 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1300769--1300848	25	3.3	25	66	27	64	51	10	3	35	1.53
1300750--1300848	50	2.0	48	94	3	171	52	8	5	34	1.53
1303516--1303693	60	3.0	60	76	6	193	41	6	20	32	1.77
1304058--1304107	16	3.2	16	74	23	52	44	0	2	54	1.11
1304076--1304120	23	2.0	23	90	0	72	37	0	2	60	1.09
1305571--1305670	24	4.2	24	74	5	94	47	17	14	22	1.82
1305564--1305672	48	2.3	48	77	0	119	48	16	13	21	1.80
1308123--1308177	8	6.5	8	85	12	67	23	27	34	14	1.94
1308142--1308174	15	2.2	15	100	0	66	24	27	36	12	1.91
1308177--1308212	13	2.8	13	86	0	54	13	19	47	19	1.83
1308164--1308217	18	3.3	18	68	24	55	12	20	48	18	1.81
1310283--1310382	24	4.2	24	74	5	94	47	17	14	22	1.82
1310276--1310384	48	2.3	48	77	0	119	48	16	13	21	1.80
1312835--1312882	8	5.5	8	87	9	60	22	25	35	16	1.95
1312882--1312917	13	2.8	13	86	0	54	13	19	47	19	1.83
1314997--1315096	24	4.2	24	74	5	94	47	17	14	22	1.82
1314990--1315098	48	2.3	48	77	0	119	48	16	13	21	1.80
1317549--1317603	8	6.5	8	85	12	67	23	27	34	14	1.94
1317568--1317600	15	2.2	15	100	0	66	24	27	36	12	1.91
1317603--1317638	13	2.8	13	86	0	54	13	19	47	19	1.83
1317590--1317643	18	3.3	18	68	24	55	12	20	48	18	1.81
1319711--1319819	48	2.3	48	75	0	110	47	16	13	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322286--1322318	15	2.2	15	100	0	66	24	27	36	12	1.91
1322321--1322357	13	2.8	13	83	0	56	13	21	45	18	1.84
1322308--1322362	18	3.3	18	71	23	66	12	21	47	18	1.82
1322267--1322321	8	6.5	8	85	12	67	23	25	34	16	1.95
1324440--1324539	24	4.2	24	74	5	94	47	17	14	22	1.82
1324433--1324541	48	2.3	48	77	0	119	48	16	13	21	1.80
1327048--1327084	13	2.8	13	83	0	56	13	21	45	18	1.84
1327027--1327089	31	2.2	27	83	13	74	14	22	46	17	1.84
1327035--1327089	18	3.3	18	71	23	66	12	21	47	18	1.82
1326993--1327048	8	6.5	8	89	8	76	23	26	35	14	1.93
1328807--1328854	7	7.0	7	97	2	89	0	41	0	58	0.98
1329380--1329446	35	1.9	35	87	6	100	34	20	22	22	1.97
1329379--1329446	20	3.7	19	68	24	56	35	20	22	22	1.96
1336515--1336543	2	14.5	2	100	0	58	51	0	0	48	1.00
1337273--1337363	45	2.0	45	100	0	182	42	6	17	32	1.75
1340525--1340553	14	2.0	15	93	6	51	31	0	20	48	1.50
1340790--1340830	10	4.2	10	93	6	75	68	0	9	21	1.18
1340790--1340828	19	2.1	19	100	0	78	69	0	10	20	1.17
1341862--1341908	20	2.4	19	86	10	67	65	2	8	23	1.31
1341873--1341910	20	1.9	20	100	0	76	65	2	10	21	1.35
1341873--1341920	20	2.5	19	86	6	53	64	4	10	20	1.41
1342754--1342790	20	1.9	19	89	10	58	24	21	5	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1342933--1343122	60	3.2	60	80	3	177	32	18	6	42	1.77
1343155--1343299	58	2.5	59	77	6	152	40	5	17	36	1.73
1344488--1344674	44	4.2	44	92	0	293	31	22	6	40	1.79
1344867--1345145	59	4.7	59	82	6	305	29	23	10	37	1.87
1344735--1345166	118	3.7	117	74	9	337	29	21	11	36	1.89
1344706--1345145	59	7.5	58	74	10	297	29	21	10	37	1.87
1345848--1345883	13	2.8	13	100	0	72	30	22	0	47	1.52
1351033--1351247	59	3.7	59	84	3	283	36	10	24	28	1.88
1351296--1351441	60	2.4	60	77	13	149	37	11	18	32	1.87
1351513--1351687	44	4.0	44	92	0	278	41	6	22	29	1.80
1352013--1352071	30	2.0	30	89	0	91	27	15	28	28	1.96
1354011--1354037	3	9.0	3	100	0	54	33	0	0	66	0.92
1355093--1355150	29	2.1	28	81	9	66	46	10	17	25	1.79
1355221--1355308	24	3.5	24	82	13	106	31	17	15	35	1.91
1355290--1355362	17	4.1	16	71	22	56	38	12	13	35	1.83
1355836--1355895	31	1.9	31	93	0	102	40	6	10	43	1.64
1356512--1356573	18	3.2	20	78	19	62	61	0	1	37	1.06
1356568--1356788	63	3.5	63	93	1	388	54	1	0	42	1.17
1356697--1356770	23	2.9	26	80	15	91	55	1	0	43	1.08
1357678--1357763	31	2.8	31	84	3	122	27	11	23	37	1.89
1362409--1362476	33	2.0	34	88	2	102	30	10	22	36	1.87
1363572--1363747	90	2.0	90	87	2	255	23	26	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1367668--1367707	3	13.3	3	89	10	64	67	0	0	32	0.91
1367846--1368991	111	10.3	111	90	2	1574	28	16	24	30	1.97
1368991--1369160	79	2.2	80	78	7	186	29	18	22	30	1.97
1369120--1369426	34	9.0	34	93	0	488	28	15	22	33	1.95
1375616--1375647	14	2.3	15	89	10	50	62	9	0	28	1.26
1376493--1376525	17	1.9	17	93	0	57	0	12	6	81	0.85
1376529--1376555	6	4.5	6	100	0	54	0	33	14	51	1.43
1377020--1377116	3	32.7	3	89	2	151	64	0	1	34	1.00
1377271--1377642	118	3.2	118	93	2	610	27	20	15	37	1.92
1377583--1377683	40	2.5	40	100	0	202	18	23	9	47	1.79
1377464--1377797	154	2.1	157	95	3	595	25	21	13	39	1.89
1377623--1378053	114	3.8	114	99	0	844	28	19	14	37	1.91
1378678--1378988	52	6.0	52	98	0	586	36	23	15	24	1.93
1380131--1380216	18	4.8	18	77	11	70	2	20	0	76	0.89
1380130--1380219	28	3.0	29	79	8	92	2	21	0	76	0.89
1391531--1391562	14	2.3	15	89	10	50	62	9	0	28	1.26
1392394--1392425	15	2.1	15	94	0	55	0	9	9	81	0.88
1392428--1392452	6	4.2	6	100	0	50	0	32	16	52	1.44
1392915--1393014	3	33.7	3	87	2	148	66	0	1	33	0.99
1397635--1397696	3	21.0	3	96	3	117	67	0	0	32	0.91
1397810--1397865	18	3.0	18	80	15	69	58	5	5	30	1.42
1399041--1399071	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402598--1402756	65	2.5	64	82	7	180	28	18	22	30	1.98
1403265--1403322	2	29.0	2	100	0	116	50	0	0	50	1.00
1403872--1403915	21	2.1	21	82	0	52	31	15	43	9	1.79
1409327--1409366	21	1.9	21	85	10	55	35	10	2	52	1.48
1411308--1411513	65	3.2	64	81	7	213	25	18	23	31	1.98
1411984--1412022	2	19.5	2	100	0	78	51	0	0	48	1.00
1412575--1412618	21	2.1	21	82	0	52	31	13	43	11	1.80
1420185--1420219	12	3.0	12	87	8	54	62	8	8	20	1.49
1420188--1420230	12	3.7	12	84	6	52	55	9	11	23	1.64
1421312--1421344	14	2.4	14	90	5	50	3	9	6	81	0.95
1422513--1422560	21	2.3	22	78	10	55	72	0	10	16	1.10
1423767--1423976	102	2.1	102	88	1	314	20	15	19	44	1.86
1429976--1430025	26	1.9	26	100	0	100	42	20	18	20	1.90
1433416--1433453	16	2.2	16	90	9	58	5	31	0	63	1.17
1443485--1443515	16	1.9	16	93	0	53	45	0	0	54	0.99
1450382--1450833	232	1.9	232	94	0	787	28	20	23	27	1.99
1452827--1452856	15	2.0	15	93	0	51	56	23	0	20	1.42
1458943--1458975	16	2.0	17	88	5	50	48	0	0	51	1.00
1460519--1460567	25	2.0	25	84	8	64	42	0	12	44	1.41
1463551--1463635	2	42.5	2	100	0	170	50	0	0	49	1.00
1466447--1466502	24	2.3	24	100	0	112	14	28	7	50	1.69
1470606--1470668	23	2.7	23	70	0	63	26	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1473129--1473192	30	2.1	30	85	0	83	34	28	18	18	1.95
1473871--1474094	64	3.5	63	82	6	263	27	19	19	33	1.96
1478445--1478668	64	3.5	63	82	6	263	27	19	19	33	1.96
1482279--1482342	30	2.1	30	85	0	83	34	28	18	18	1.95
1483021--1483244	64	3.5	63	82	6	263	27	19	19	33	1.96
1486846--1486909	30	2.1	30	85	0	83	34	28	18	18	1.95
1487584--1487803	64	3.5	62	82	7	214	26	19	20	33	1.96
1491381--1491444	30	2.1	30	85	0	83	34	28	18	18	1.95
1492106--1492341	64	3.7	65	80	7	250	27	19	19	33	1.96
1495334--1495366	17	1.9	17	88	11	50	42	27	3	27	1.70

Tables:   1   2   3   4   5   6   7   8   9