genome.fa.s9001.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009001.1 Hibiscus syriacus cultivar Beakdansim tig00112383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4740655

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  14  of  24  ( 2777 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2837457--2837610	20	7.6	21	67	16	78	37	23	16	22	1.94
2837494--2837618	20	6.2	20	76	14	132	41	23	16	19	1.90
2839866--2839985	63	1.9	62	81	10	145	22	10	32	35	1.87
2840273--2840372	42	2.4	42	77	14	116	24	35	20	21	1.96
2840274--2840372	21	4.7	21	72	19	82	24	35	19	21	1.96
2840338--2840392	21	2.6	21	82	5	67	20	36	25	18	1.94
2841954--2841996	20	2.2	20	95	0	77	20	18	18	41	1.90
2842172--2842297	39	3.2	39	94	0	225	17	15	19	47	1.82
2842599--2842651	24	2.2	25	80	10	65	45	13	5	35	1.67
2842607--2842643	18	2.1	18	89	0	56	51	10	5	32	1.60
2843030--2843079	25	2.0	25	96	0	91	44	22	8	26	1.80
2843146--2843192	20	2.3	20	88	0	67	36	21	19	23	1.95
2843212--2843267	20	2.8	20	77	0	76	21	17	21	39	1.93
2845877--2845930	24	2.2	24	93	0	90	40	20	18	20	1.91
2846924--2846972	19	2.5	19	87	9	64	22	16	28	32	1.95
2848644--2848741	31	3.2	31	85	0	133	39	17	8	34	1.79
2852030--2852069	19	2.1	19	90	0	62	75	0	10	15	1.05
2852035--2852094	25	2.5	23	82	12	68	73	0	13	13	1.10
2852110--2852160	3	17.7	3	92	8	88	68	0	0	31	0.90
2852426--2852509	17	4.9	17	69	16	57	69	1	2	27	1.09
2852881--2852992	37	3.0	37	93	0	188	32	13	12	41	1.82
2853782--2854037	34	7.4	34	75	14	132	39	14	20	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2853804--2853860	15	3.5	15	71	17	51	40	15	21	22	1.91
2853932--2854050	36	3.4	36	90	3	188	35	12	21	30	1.91
2854026--2854068	21	2.0	22	95	4	79	41	11	18	27	1.85
2854554--2854651	43	2.3	43	87	7	137	22	15	29	32	1.95
2854662--2854851	87	2.2	87	99	0	371	24	14	24	36	1.93
2856319--2856380	13	4.7	13	76	9	63	3	11	6	79	1.04
2859579--2859628	15	3.4	15	81	10	50	74	2	2	22	1.03
2859602--2859636	18	1.9	18	94	0	61	71	2	0	25	1.00
2859886--2859995	26	4.2	26	71	15	68	68	2	4	24	1.22
2860334--2860445	37	3.0	37	96	0	197	34	11	12	41	1.79
2860591--2860663	20	3.6	20	74	9	58	30	13	16	39	1.87
2864329--2864364	2	18.0	2	100	0	72	50	0	0	50	1.00
2864918--2864956	20	2.0	20	90	5	62	30	10	0	58	1.31
2865359--2865406	20	2.4	20	85	0	69	27	20	4	47	1.68
2870820--2870889	30	2.3	31	85	5	106	28	11	10	50	1.71
2877835--2877928	31	3.0	31	95	3	163	38	24	19	18	1.93
2878584--2878743	64	2.5	64	81	4	171	26	18	18	36	1.94
2883859--2883919	21	3.2	21	63	29	55	32	4	19	42	1.73
2883851--2883969	35	3.3	36	90	5	179	32	5	18	43	1.72
2884351--2884375	12	2.1	12	100	0	50	28	16	16	40	1.89
2888471--2888589	35	3.3	37	87	8	165	32	5	18	43	1.72
2891751--2891795	20	2.4	19	85	7	56	22	24	11	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2891758--2891795	20	1.9	20	88	0	58	21	23	13	42	1.88
2892088--2892175	41	2.1	41	87	0	122	34	21	20	23	1.97
2892061--2892218	61	2.6	61	82	7	212	31	24	19	24	1.98
2892102--2892195	20	4.7	20	82	2	125	37	22	21	19	1.95
2892392--2892457	22	3.0	22	88	4	98	25	39	13	21	1.90
2892793--2892883	20	4.6	20	84	1	94	15	17	21	45	1.86
2892847--2892890	20	2.2	20	91	0	70	11	13	20	54	1.69
2894759--2894900	20	7.8	20	74	20	114	42	20	19	16	1.89
2894885--2894914	14	2.1	14	93	0	51	33	26	20	20	1.97
2894976--2895062	20	4.3	20	89	5	113	20	18	22	37	1.94
2894976--2895062	40	2.2	40	89	0	129	20	18	22	37	1.94
2894974--2895072	20	4.9	20	87	2	92	20	18	22	39	1.92
2895549--2895589	21	2.1	19	86	13	57	19	36	19	24	1.95
2897032--2897070	14	2.8	14	84	0	51	35	0	17	46	1.49
2897253--2897348	33	2.9	34	87	3	131	14	23	19	41	1.89
2897320--2897408	20	4.4	20	91	2	144	16	22	25	34	1.95
2899841--2899894	24	2.2	24	93	0	90	40	20	18	20	1.91
2900735--2900788	20	2.7	20	100	0	108	25	18	25	29	1.98
2900785--2900901	20	5.8	20	77	7	87	21	17	21	39	1.93
2900898--2900943	21	2.2	21	88	0	65	41	17	23	17	1.90
2904837--2904878	22	1.9	22	85	9	59	52	14	4	28	1.62
2906599--2906680	25	3.0	27	78	10	96	54	7	10	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2906696--2906741	17	2.5	19	73	23	53	63	4	4	28	1.33
2906702--2906735	16	2.1	16	88	0	50	58	5	5	29	1.45
2909433--2909534	23	4.4	23	77	4	107	19	19	23	37	1.94
2909433--2909529	46	2.1	46	86	0	131	20	20	21	37	1.95
2909533--2909579	24	2.0	24	87	8	69	25	21	21	31	1.98
2915302--2915373	37	2.0	35	82	15	85	25	6	18	50	1.71
2918881--2918917	3	12.3	3	100	0	74	35	0	0	64	0.94
2921551--2921607	19	3.2	19	71	19	68	40	17	28	14	1.88
2921541--2921609	34	2.0	34	100	0	138	42	17	26	14	1.87
2921541--2921593	15	3.3	15	71	19	52	41	16	26	15	1.88
2928788--2928843	26	2.2	25	84	9	69	48	0	0	51	1.00
2933649--2934040	188	2.1	184	92	3	669	45	8	3	42	1.52
2936451--2936489	15	2.3	18	87	12	57	30	0	2	66	1.05
2942190--2942269	5	15.8	5	73	21	69	35	0	1	63	1.02
2942216--2942278	8	7.6	8	71	25	51	34	0	1	63	1.04
2942180--2942278	50	2.0	50	92	4	164	34	0	1	64	1.00
2945555--2945590	13	2.7	13	91	4	54	66	13	0	19	1.24
2945555--2945613	14	4.3	14	79	12	59	64	13	0	22	1.28
2946104--2946185	42	2.0	42	82	4	103	24	15	30	29	1.96
2949311--2949464	76	2.0	76	93	0	263	50	7	1	39	1.42
2954912--2954998	45	1.9	46	90	2	140	27	24	19	28	1.98
2954965--2955018	20	2.7	20	97	0	99	33	27	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2960842--2960923	23	3.6	22	73	14	78	20	24	23	31	1.98
2963009--2963047	20	2.0	20	85	10	53	28	12	12	46	1.79
2963636--2963723	45	1.9	46	86	2	124	28	23	18	29	1.98
2967109--2967169	2	30.5	2	100	0	122	50	0	0	49	1.00
2967492--2967531	2	20.0	2	100	0	80	50	0	0	50	1.00
2969094--2969147	26	2.0	27	85	3	74	29	3	16	50	1.63
2970774--2970866	21	4.6	20	81	4	114	40	18	22	18	1.91
2970771--2970866	41	2.3	41	94	0	165	41	17	21	18	1.90
2970793--2970923	41	3.2	41	80	6	115	39	20	19	20	1.92
2970855--2970949	20	4.7	20	77	2	82	35	24	16	23	1.95
2970774--2970902	21	6.3	21	70	9	97	41	18	20	19	1.90
2972781--2972825	18	2.5	18	85	0	63	26	42	15	15	1.87
2973298--2973343	20	2.3	20	84	0	56	34	26	21	17	1.95
2973338--2973447	32	3.4	32	91	1	175	46	23	20	9	1.79
2973353--2973442	14	5.9	14	69	23	65	47	24	20	7	1.76
2973454--2973607	19	8.6	19	75	14	114	12	20	24	42	1.87
2973476--2973533	14	3.9	14	79	16	71	8	17	25	48	1.75
2973459--2973549	32	2.8	33	94	3	166	10	18	23	47	1.80
2973534--2973588	20	2.8	19	89	5	83	16	25	23	34	1.95
2975453--2975488	14	2.6	14	90	0	54	30	0	22	47	1.52
2975595--2975671	14	4.7	15	74	22	59	45	19	22	12	1.84
2975605--2975671	18	3.8	19	81	18	92	46	17	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2976087--2976122	14	2.6	14	90	0	54	30	0	22	47	1.52
2976229--2976305	14	4.7	15	74	22	59	45	19	22	12	1.84
2976239--2976305	18	3.8	19	81	18	92	46	17	22	13	1.83
2975203--2976543	634	2.1	634	99	0	2637	32	12	19	35	1.89
2977410--2977468	24	2.5	24	82	0	73	28	16	18	35	1.93
2977643--2977679	12	3.1	12	100	0	74	72	0	27	0	0.84
2979976--2980073	19	5.7	19	65	26	74	43	19	24	12	1.85
2979976--2980069	33	2.8	33	92	6	163	43	19	24	12	1.85
2980069--2980111	20	2.2	20	87	4	61	16	18	23	41	1.89
2980097--2980130	14	2.4	14	85	0	50	8	23	20	47	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24