Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009001.1 Hibiscus syriacus cultivar Beakdansim tig00112383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4740655

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2777 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4728132--4728197
9
7.0
9
83
14
80
84
0
15
0
0.61
4728135--4728197
10
6.5
10
83
7
76
85
0
14
0
0.59
4728132--4728197
19
3.6
18
84
12
89
84
0
15
0
0.61
4728135--4728197
26
2.5
26
84
5
85
85
0
14
0
0.59
4729312--4729798
164
3.0
166
95
2
876
27
13
21
37
1.91
4729312--4729798
83
5.9
83
93
3
835
27
13
21
37
1.91
4730539--4731401
222
3.9
226
92
5
1410
37
13
19
30
1.90
4730518--4731401
331
2.7
336
88
6
1315
36
13
19
30
1.90
4730539--4731432
443
2.0
442
89
5
1378
37
13
19
29
1.89
4731677--4731728
3
17.7
3
88
4
79
32
1
0
65
1.04
4734169--4734239
24
2.8
25
83
12
85
46
0
2
50
1.16
4734193--4734273
35
2.2
39
86
8
116
44
0
1
54
1.08
4734146--4734294
61
2.4
63
93
5
252
42
0
2
55
1.14
4734480--4734518
13
2.8
14
84
11
53
74
0
0
25
0.82
4734480--4734518
7
5.6
7
87
9
53
74
0
0
25
0.82
4735304--4735341
20
1.9
20
100
0
76
42
2
13
42
1.57
4740020--4740062
2
21.0
2
95
4
77
48
2
0
48
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!